BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941921
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1146 0.0
> AT5G23920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G52420.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:8073224-8074170 REVERSE LENGTH=881
Length=881
Score = 1146 bits (620), Expect = 0.0
Identities = 698/736 (95%), Gaps = 3/736 (0%)
Strand=Plus/Plus
Query 1 TCTTGAAACTCTAGAAACTTTTTCAATGTCGGAAGAAATAAGAGAGCATGATCTTACCGA 60
||||||||||| | |||||||| ||||||||||||||||| ||||| | ||||| |||||
Sbjct 28 TCTTGAAACTCCAAAAACTTTTCCAATGTCGGAAGAAATACGAGAGAAAGATCTCACCGA 87
Query 61 CTCTAAACCTTCTCCACCGCAAACACCACCAAAACGCGGTCTCATCAGCCGCAAAAGACA 120
||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 88 CTCTAAACCATCTCCACCGCAACCACCACCGAAACGTGGTCTCATCAGCCGCAAAAGACA 147
Query 121 GCTGGTGTTTCTCTCCTTCATGATATTACTAGCCGCAAAAGGACTCGTCGGAATCGGAGA 180
||| ||||||||||| |||||||| ||| ||||||||||||||||||| || ||||||||
Sbjct 148 GCTTGTGTTTCTCTCTTTCATGATTTTATTAGCCGCAAAAGGACTCGTTGGGATCGGAGA 207
Query 181 AATAGCGTTTGTAATCTTGTGTTATATCTACTTGTATGAGTTTCTTTCAAGATTTGCCTT 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 208 AATAGCGTTTGTAATCTTGTGTTATATCTACTTGTATGAGTTTCTCTCAAGATTTGCCTT 267
Query 241 CCCTCGCAAGCAAACAGAGCAGAAGAAGAGACTCTCAAACCCTAAAAACAAACTCTTTCA 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CCCTCGCAAGCAAACAGAACAGAAGAAGAGACTCTCAAACCCTAAAAACAAACTCTTTCA 327
Query 301 AGCTTACTTCCTCGCCACTGCAATTATAGGCCTACTCTTCCCTATTTGTTACATCGGAGA 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 328 AGCTTACTTCCTCGCCACTGCAATTATAGGCCTACTCTTCCCTCTTTGTTACATCGGAGA 387
Query 361 TGGAATATACCGTGGAGACATTCACGGTGCTGGAGCCGCCGCACCACATCTATTCCTCCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 388 TGGAATATACCGTGGAGACATTCACGGTGCTGGAGCCGCCGCACCACATCTATTTCTCCT 447
Query 421 CTCAGGTCAAGCTTTCACAGAACCTATTGGTTTCTCCGACAAGTTTTCTATGCCAATAGG 480
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 448 CTCAGGTCAAGCTTTCACAGAACCTATTGGTTTCTCTGACAAGTATTCGATGCCAATAGG 507
Query 481 TATTCTTGGACCAGTCTTCTACAACGCTCGTCGCATTTTCGCTCTTTTGGATTGGGTTAA 540
|||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 508 TATTCTTGGACCGGTTTTCTACAACGCTCGTAGGATTTTCGCTCTTTTGGATTGGGTTAA 567
Query 541 AGCAGAATTCTCCGATACTCAACGTCCCGGTGGTCCGGTGAGATTATACGGAGGAAGAGT 600
||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct 568 AGCAGAATTCTCCGACACTCAACGTCCTGGTGGTCCGTTGAGATTGTACGGAGGAAGAGT 627
Query 601 GATTGCATCGGTTAACACAGTGATGTGGTTCTATAATCTGTTTGGTCTCTTGTTGCCTGT 660
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 628 GATTGCATCGGTTAACACGGTGATGTGGTTTTATAATCTGTTTGGTCTCTTGTTGCCTGT 687
Query 661 GTTTCTTCCTCGGTCTTGTGAGATTTACTTCTCCGGTGATAACAAAGATGATTGAA-TGA 719
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 688 GTTTCTTCCTAGGTCTTGTGAGATTTACTTCTCCGGTGATAACAAAGATGATTGAACTGA 747
Query 720 TATGTGTATTTGTCTC 735
| | ||||||||||||
Sbjct 748 T-T-TGTATTTGTCTC 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5