BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941943 Length=233 Score E Sequences producing significant alignments: (Bits) Value AT5G24105.1 | Symbols: AGP41 | arabinogalactan protein 41 | chr... 361 2e-99 > AT5G24105.1 | Symbols: AGP41 | arabinogalactan protein 41 | chr5:8151924-8152867 FORWARD LENGTH=576 Length=576 Score = 361 bits (195), Expect = 2e-99 Identities = 220/232 (95%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 3 GGAGGAA-AAATAATTGAAATGTCGAGCTCAAGGCTTTTCTTCGGAGTTTCTACAATGGT 61 ||||||| ||| || ||||||||| |||| |||||||||||||||||||||||||| || Sbjct 156 GGAGGAATAAA-CATCGAAATGTCGGGCTCGAGGCTTTTCTTCGGAGTTTCTACAATTGT 214 Query 62 ATCGATAATTTTCGCCATTTTGTTGCCGATGGCACAAGCTCAATCCGCGGCTCCTGCTCC 121 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 215 ATCGATAATTTTCGCCATTTTGTTGCCGATGGCACATGCTCAATCCGCAGCTCCTGCTCC 274 Query 122 GGCTCCAACAAGTGACGGAACAACGATAGACCAAGGCATAGCATATGTCCTTATGTTGGT 181 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 275 GGCTCCAACAAGCGACGGAACAACGATAGACCAAGGCATAGCATATGTCCTTATGTTGGT 334 Query 182 GGCTTTGGTCCTCACATATCTCATCCATTGATCCTTTTGTCAATTTAATTTT 233 ||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 335 GGCTTTGGTCCTCACATATCTCATCCATTGATCCTCTTGTTAATTTAATTTT 386 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10505959541 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5