BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941951
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:81... 1862 0.0
AT5G24150.1 | Symbols: SQP1, SQE5 | FAD/NAD(P)-binding oxidored... 1808 0.0
AT5G24155.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 466 3e-130
AT5G24140.1 | Symbols: SQP2 | squalene monooxygenase 2 | chr5:8... 444 1e-123
> AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:8183075-8186640
REVERSE LENGTH=1809
Length=1809
Score = 1862 bits (1008), Expect = 0.0
Identities = 1402/1593 (88%), Gaps = 24/1593 (2%)
Strand=Plus/Plus
Query 7 AATAGATTTGG---GATATGGCCTTTACGCACGTTTGTTTATGGACGGTACTCGCCTTCG 63
||||||||||| ||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 23 AATAGATTTGGTTATATATGGCTTTTACGCACGTTTGTTTATGGACGTTAGTCGCCTTCG 82
Query 64 CGCTGACCTGGACGGTGTTCTACGTTACCAACAGGAAGAAAAAGGCGACGGAATTGGCGG 123
|||||| ||||||||||||||| ||||||||| |||||| ||||||||||| ||||| |
Sbjct 83 TGCTGACGTGGACGGTGTTCTACCTTACCAACATGAAGAAGAAGGCGACGGATTTGGCTG 142
Query 124 ATGCGGCAGCAGAGGAGAGAAGAA-ACGGTGCTTCTGACGTCATCATCGTCGGGGCTGGT 182
|| ||| || ||||| || || |||||||| |||||||||| |||||||||||||||
Sbjct 143 ATACGGTGGCTGAGGA-TCAAAAAGACGGTGCTGCTGACGTCATTATCGTCGGGGCTGGT 201
Query 183 GTCGGTGGCTCGGCTCTTGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATT 242
|| ||||| |||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 202 GTAGGTGGTTCGGCTCTCGCATATGCTCTTGCTAAGGATGGGCGTCGAGTACATGTGATC 261
Query 243 GAGAGGGACATGAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAGCCAGGAGGACGA 302
||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 262 GAGAGGGACATGAGAGAACCAGAAAGAATGATGGGTGAGTTTATGCAACCTGGCGGACGA 321
Query 303 CTCATGCTTTCTAAGCTTGGCCTTCAAGATTGTC-TGGATGGTATAGATGCCCAAAAAGC 361
|||||||||||||| ||||||||||||||||| | |||| | |||||||| || |||||
Sbjct 322 CTCATGCTTTCTAAACTTGGCCTTCAAGATTG-CTTGGAAGACATAGATGCACAGAAAGC 380
Query 362 CACGGGCATGGCAGTTTATAAGGACGGCAAAGAAGCAGTCGCATCTTTTCCGGTGGACAA 421
|||||| ||||||||||||| || || |||||||||| |||| ||||||| ||||| ||
Sbjct 381 CACGGGTTTGGCAGTTTATAAAGATGGAAAAGAAGCAGACGCACCTTTTCCAGTGGATAA 440
Query 422 TAACAATTTTCCTTACGATCCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAA-A 480
||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 441 CAACAATTTTTCTTATGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAACA 500
Query 481 GTCTGCGCCAAAAGGCTTCTTCTCTTTCTAGTGTGCGCCTGGAAGAAGGAACGGTGAAGT 540
||||| | |||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 501 -ACTGCGTCGAAAGGCTTTTTCTCTTTCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGT 559
Query 541 CGTTAATAGAAGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAACAAAGCAGGCGAAG 600
| ||| ||||||||||||||||| ||||||||||||||||||| || |||| ||||||||
Sbjct 560 CTTTACTAGAAGAAAAAGGAGTGGTCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAG 619
Query 601 AAACAACAGCATTGGCGCCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTC 660
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AAACAACAGCCTTGGCACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTC 679
Query 661 GGTCTCTAAACGAT-A-A-CAATGCGGAGGTTTTGTCTTACCA-AGTTGGTTACATCTCG 716
||||||| || ||| | | |||||| ||| || |||| ||| | |||||||||||||||
Sbjct 680 GGTCTCTTAATGATGACAACAATGCTGAGATTATGTCGTAC-ATAGTTGGTTACATCTCA 738
Query 717 AAGAATTGTCGGCTTGACGATCCCGAAAACCTTCATTTGATAATGTCTAAACCCTCCTCC 776
||||||||||||||||| || |||||||| || || |||||| |||||||||| || | |
Sbjct 739 AAGAATTGTCGGCTTGAAGAACCCGAAAAGCTACACTTGATATTGTCTAAACCATCTTTC 798
Query 777 ATCATGTTGTACCAACTAAGCAGCACTGATGTTCGTTGTGGTTTTGAGCTTTTCCCCGAC 836
| |||| | |||||| ||||||||||||| |||||||||||||||||| || |||||||
Sbjct 799 ACCATGGTATACCAAATAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAA 858
Query 837 AATTTTCCTTCTATTGCAAAAGGTGAAATGGCTACTTTCGCGAAGAACACTCTAGCTCCT 896
|||||||||||||||||||| ||||||||| |||||||| |||||| ||| ||| ||||
Sbjct 859 AATTTTCCTTCTATTGCAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCT 918
Query 897 CAGGTACCTCCAAAACTTCGCAAAATATTCTTGAAAGGTCTAGATGAGGGAGCACACATA 956
||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 919 CAGGTACCTCCAAAACTCCGCAAAATATTTTTGAAAGGTATAGATGAGGGAGCACACATA 978
Query 957 AAAGCGGTTCCAGCAAAGCGCATGACAGCTACTTTAAGCAATAAAAAAGGAGTGATTGTG 1016
|||| ||| || ||||||||||||||| ||||||||||||| || ||||| ||||||||
Sbjct 979 AAAGTGGTGCCGGCAAAGCGCATGACATCTACTTTAAGCAAGAAGAAAGGTGTGATTGTA 1038
Query 1017 TTGGGAGATGCATTCAACATGCGTCATCCA-TCAGTCGCGGCTGGAATGATGGTTTTATT 1075
||||||||||||||||| |||||||||||| | || || ||||||||||||||||| |
Sbjct 1039 TTGGGAGATGCATTCAATATGCGTCATCCAGTT-GTTGCATCTGGAATGATGGTTTTACT 1097
Query 1076 GTCTGATATTCTCATTCTACGTCGTCTTCTCCAGCCACTAAGCAACCTCGGTGATGCAAA 1135
||| || |||||||||||||| |||||||| |||||| ||||||||||||| ||||||||
Sbjct 1098 GTCGGACATTCTCATTCTACGCCGTCTTCTTCAGCCATTAAGCAACCTCGGCGATGCAAA 1157
Query 1136 CAAAGTCTCAGAAGTCATTAAGTCCTTTTAT-AGCATCCGCAAGCCAATGTCAGCGACGG 1194
||||||||||||||| || || ||||||||| | ||||||||||||||||| |||||||
Sbjct 1158 CAAAGTCTCAGAAGTTATCAATTCCTTTTATGAT-ATCCGCAAGCCAATGTCGGCGACGG 1216
Query 1195 TGAACACATTAGGAACTGCATTTTCTCAAGTGCTAATTGCATCAACGGACGAAGCAAAAG 1254
| |||||||| |||| ||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 1217 TTAACACATTGGGAAATGCATTTTCTCAAGTACTAATTGGATCAACGGATGAAGCAAAAG 1276
Query 1255 AAGCAATGAGACAGGGT-TGCTATGATTACCTTTGTAGTGGCGGTTTTCGCACGTCAGGG 1313
| ||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||
Sbjct 1277 AGGCAATGAGACAGGGTGT-CTATGATTACCTTTGTAGTGGCGGGTTTCGTACGTCAGGG 1335
Query 1314 ATGATGGCTCTACTAGGTGGCATGAATCCTCGTCCGATCTCTCTCATTTATCATCTCTGC 1373
||||||||||| || || ||||||||||||||||| |||||||| | |||||||| ||
Sbjct 1336 ATGATGGCTCTGCTCGGCGGCATGAATCCTCGTCCTCTCTCTCTCGTCTATCATCTTTGT 1395
Query 1374 GCTATCACACTA-CATTCCATTGGCCATCTTCTCTCTCCATTTCCTTC-CCCCATTCGCA 1431
|| ||||| ||| | | |||||||||| || |||||||||||||| || |||| ||||||
Sbjct 1396 GCCATCACTCTATCCT-CCATTGGCCAACTGCTCTCTCCATTTCCCTCTCCCC-TTCGCA 1453
Query 1432 TTTGGCATAGCCTCAGGCTTTTTGGTTTAGCTTTGAAAATGTTGGTTCCCCATCTCAAGG 1491
||||||||||||||| |||||||||||| || ||||||||||||||||| ||||||| |
Sbjct 1454 TTTGGCATAGCCTCAAGCTTTTTGGTTTGGCCATGAAAATGTTGGTTCCCAATCTCAAAG 1513
Query 1492 CTGAGGGAGTTAGCCAGATGTTGTTTCCTGCAAACGCAGCCGCATATCGCAAAAGCTATA 1551
|||| ||||||||||| ||||||||||| ||||| |||||||| |||| |||||||||||
Sbjct 1514 CTGAAGGAGTTAGCCAAATGTTGTTTCCAGCAAATGCAGCCGCGTATCACAAAAGCTATA 1573
Query 1552 TGGCCGCGTCTGTTTTTTAAACATTGATGCTCT 1584
|||| || | | | ||||| ||||||||||
Sbjct 1574 TGGCTGCAACCACTCTCTAAACTTTGATGCTCT 1606
> AT5G24150.1 | Symbols: SQP1, SQE5 | FAD/NAD(P)-binding oxidoreductase
family protein | chr5:8172332-8175431 REVERSE LENGTH=1849
Length=1849
Score = 1808 bits (979), Expect = 0.0
Identities = 1399/1602 (87%), Gaps = 28/1602 (2%)
Strand=Plus/Plus
Query 1 CTAG-TTAATAGATTTGGGATATGGCCTTTACGCACGTTTGTTTATGGACGGTACTCGCC 59
|||| || ||||| | |||||||||||||||| ||||||| |||||||| ||||||||
Sbjct 18 CTAGCTT-ATAGA-TAAGGATATGGCCTTTACGAACGTTTGCCTATGGACGCTACTCGCC 75
Query 60 TTCGCGCTGACCTGGACGGTGTTCTACGTTACCAACAGGAAGAAAAAGGCGACGGAATTG 119
||| |||||| ||||| ||||||||||| || |||||| ||| ||||||||| | |||
Sbjct 76 TTCATGCTGACTTGGACAGTGTTCTACGTCACAAACAGGGGGAAGAAGGCGACGCAGTTG 135
Query 120 GCGGATGCGGCAGCAGAGGAGAGAAGAA-ACGGTGCTTCTGACGTCATCATCGTCGGGGC 178
|||||||||| | || ||| | |||| |||||||| ||||||| |||||||| |||||
Sbjct 136 GCGGATGCGGTGGTTGAAGAGCG-AGAAGACGGTGCTACTGACGTTATCATCGTTGGGGC 194
Query 179 TGGTGTCGGTGGCTCGGCTCTTGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGT 238
||| || || ||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 195 TGGAGTAGGCGGCTCGGCTCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTCCATGT 254
Query 239 GATTGAGAGGGACATGAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAGCCAGGAGG 298
|| ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 255 AATAGAGAGGGACCTGAGAGAACCAGAGAGAATCATGGGTGAGTTTATGCAACCAGGAGG 314
Query 299 ACGACTCATGCTTTCTAAGCTTGGCCTTCAAGATTGTCTGGATGGTATAGATGCCCAAAA 358
|||||||||||| ||||||||||| ||| |||||||| |||| || ||||||||||||||
Sbjct 315 ACGACTCATGCTCTCTAAGCTTGGTCTTGAAGATTGTTTGGAGGGAATAGATGCCCAAAA 374
Query 359 AGCCACGGGCATGGCAGTTTATAAGGACGGCAAAGAAGCAGTCGCATCTTTTCCGGTGGA 418
||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 375 AGCCACGGGCATGACAGTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCCGTGGA 434
Query 419 CAATAACAATTTTCCTTACGATCCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCA 478
||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 435 CAACAACAATTTTCCTTTTGATCCTTCGGCTCGATCTTTTCACAATGGCCGATTCGTCCA 494
Query 479 AAG-TCTGCGCCAAAAGGCTTCTTCTCTTTCTAGTGTGCGCCTGGAAGAAGGAACGGTGA 537
| | | |||| |||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 495 ACGAT-TGCGGCAAAAGGCTTCTTCTCTTCCCAATGTGCGCCTGGAAGAAGGAACGGTGA 553
Query 538 AGTCGTTAATAGAAGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAACAAAGCAGGCG 597
|||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 554 AGTCTTTGATAGAAGAAAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCG 613
Query 598 AAGAAACAACAGCATTGGCGCCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTC 657
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 614 AAGAAACAACAGCCTTGGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTC 673
Query 658 GTCGGTCTCTAAACGATAACAATGCGGAGGTTTTGTCTTACCAAGTTGGTTACATCTCGA 717
| |||||||| || || ||||||||||||||| |||| ||||||||||||| ||||| |
Sbjct 674 GCCGGTCTCTTAATGACAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTTTATCTCAA 733
Query 718 AGAATTGTCGGCTTGACGATCCCGAAAACCTTCAT-TTGATAATGTCTAAACCCTCCTCC 776
|||| |||| |||||| || |||||||| || | |||||||||||||||||||||| |
Sbjct 734 AGAACTGTCAGCTTGAAGAACCCGAAAAG-TTAAAGTTGATAATGTCTAAACCCTCCTTC 792
Query 777 ATCATGTTGTACCAACTAAGCAGCACTGATGTTCGTTGTGGTTTTGA-GCTTTTCCCCGA 835
| ||||||||| ||| | |||||||| || |||||||||| |||||| | || ||||| |
Sbjct 793 ACCATGTTGTATCAAATCAGCAGCACCGACGTTCGTTGTGTTTTTGAAG-TTCTCCCCAA 851
Query 836 CAATTTTCCTTCTATTGCAAAAGGTGAAATGGCTACTTTCGCGAAGAACACTCTAGCTCC 895
||| ||||||||||| |||| ||||||||||||||||||| |||||||||| | |||||
Sbjct 852 CAACATTCCTTCTATTTCAAATGGTGAAATGGCTACTTTCGTGAAGAACACTATTGCTCC 911
Query 896 TCAGGTACCTCCAAAACTTCGCAAAATATTCTTGAAAGGTCTAGATGAGGGAGCACACAT 955
|||||||||| |||||| ||||||||||| |||||||| | ||||| |||| ||| ||
Sbjct 912 TCAGGTACCTTTAAAACTCCGCAAAATATTTTTGAAAGGGATTGATGAAGGAGAACATAT 971
Query 956 AAAAGCGGTTCCAGCAAAGC-GCATGACAGCTACTTTAAGCAATAAAAAAGGAGTGATTG 1014
|||||| | ||| ||||| | |||||||||||||| ||| | || ||||||||||||
Sbjct 972 AAAAGCCATGCCAACAAAGAAG-ATGACAGCTACTTTGAGCGAGAAGAAAGGAGTGATTT 1030
Query 1015 TGTTGGGAGATGCATTCAACATGCGTCATCCATCAGTCGCGGCTGGAATGATGGTTTTAT 1074
| |||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 1031 TATTGGGAGATGCATTCAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTAT 1090
Query 1075 TGTCTGATATTCTCATTCTACGTCGTCTTCTCCAGCCACTAAGCAACCTCGGTGATGC-- 1132
| ||||| |||||||||||||| ||||||||||||||| |||||||||| || ||||
Sbjct 1091 TATCTGACATTCTCATTCTACGCCGTCTTCTCCAGCCATTAAGCAACCTTGGCAATGCGC 1150
Query 1133 AAACAAAGTCTCAGAAGTCATTAAGTCCTTTTAT-AGCATCCGCAAGCCAATGTCAGCGA 1191
||| ||| ||||| |||| || |||||||||||| | ||||||||||||||||||||||
Sbjct 1151 AAA-AAA-TCTCACAAGTTATCAAGTCCTTTTATGAT-ATCCGCAAGCCAATGTCAGCGA 1207
Query 1192 CGGTGAACACATTAGGAACTGCATTTTCTCAAGTGCTAATTGCATCAACGGACGAAGCAA 1251
| || ||||| ||||||| |||||| |||||||||||| ||||||| |||||||||||||
Sbjct 1208 CAGTTAACACGTTAGGAAATGCATTCTCTCAAGTGCTAGTTGCATCGACGGACGAAGCAA 1267
Query 1252 AAGAAGCAATGAGACAGGGTTGCTATGATTACCTTTGTAGTGGCGGTTTTCGCACGTCAG 1311
|||| ||||||||||| ||||||||||||||||| | |||||| || |||||||||||||
Sbjct 1268 AAGAGGCAATGAGACAAGGTTGCTATGATTACCTCTCTAGTGGTGGGTTTCGCACGTCAG 1327
Query 1312 GGATGATGGCTCTACTAGGTGGCATGAATCCTCGTCCGATCTCTCTCATTTATCATCTCT 1371
||||||||||| | ||||| |||||||| |||||||||||||||||||| |||||||| |
Sbjct 1328 GGATGATGGCTTTGCTAGGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTAT 1387
Query 1372 GCGCTATCACACTA-CATTCCATTGGCCATCTTCTCTCTCCATTTCCTTC-CCCCATTCG 1429
| |||||||| ||| | | ||||||||||||| |||||||||||||| || |||| ||||
Sbjct 1388 GTGCTATCACTCTATCCT-CCATTGGCCATCTACTCTCTCCATTTCCCTCTCCCC-TTCG 1445
Query 1430 CATTTGGCATAGCCT-CAGGCTTTTTGGTTTAGCTTTGAAAATGTTGGTTCCCCATCTCA 1488
||||||||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1446 CATTTGGCATAGCCTTC-GACTTTTTGGTTTGGCTATGAAAATGTTGGTTCCCCATCTCA 1504
Query 1489 AGGCTGAGGGAGTTAGCCAGATGTTGTTTCCTG-CAAACGCAGCCGCATATCGCAAAAGC 1547
||||||| ||||||||||| ||||||||||| | ||| ||| ||||| ||| ||||||||
Sbjct 1505 AGGCTGAAGGAGTTAGCCAAATGTTGTTTCCAGTCAA-CGCCGCCGCGTATAGCAAAAGC 1563
Query 1548 TATATGGCCGCGTCTGTTTTTTAAA-CATTGATGCTCTAAAC 1588
|||||||| || | | | | |||| || || |||| |||||
Sbjct 1564 TATATGGCTGCAACGGCTCTCTAAAACACTGGTGCTTTAAAC 1605
> AT5G24155.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr5:8180118-8181027 REVERSE LENGTH=377
Length=377
Score = 466 bits (252), Expect = 3e-130
Identities = 301/325 (93%), Gaps = 1/325 (0%)
Strand=Plus/Plus
Query 6 TAATAGATTTGGGATATGGCCTTTACGCACGTTTGTTTATGGACGGTACTCGCCTTCGCG 65
|||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 4 TAATAGATAT-GGATATGGCCTTTACGCACGTTTGTCTATGGACGCTACTCGCCTTCGTG 62
Query 66 CTGACCTGGACGGTGTTCTACGTTACCAACAGGAAGAAAAAGGCGACGGAATTGGCGGAT 125
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 63 CTGACCTGGACGGTGTTCTACGTTACCAACAGGAAGAAGAAGGCGCCGGAATTGGCAGAT 122
Query 126 GCGGCAGCAGAGGAGAGAAGAAACGGTGCTTCTGACGTCATCATCGTCGGGGCTGGTGTC 185
||||||||||||||||||||| || ||||| |||| || ||||||||||||||||| ||
Sbjct 123 GCGGCAGCAGAGGAGAGAAGAGACAGTGCTGCTGATGTTATCATCGTCGGGGCTGGAGTA 182
Query 186 GGTGGCTCGGCTCTTGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATTGAG 245
|||||||||||||| |||||| |||||||||||||||| || ||||||| || ||| |||
Sbjct 183 GGTGGCTCGGCTCTCGCATATTCTCTTGCTAAGGACGGGCGCCGAGTACTTGCGATAGAG 242
Query 246 AGGGACATGAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAGCCAGGAGGACGACTC 305
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AGGGATATGAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAGCCAGGAGGACGACTC 302
Query 306 ATGCTTTCTAAGCTTGGCCTTCAAG 330
||||||||||||||||||||| |||
Sbjct 303 ATGCTTTCTAAGCTTGGCCTTGAAG 327
Score = 78.7 bits (42), Expect = 2e-13
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1521 GCAAACGCAGCCGCATATCGCAAAAGCTATATGGCCGCGTCTGTTTTTTAA 1571
|||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 327 GCAAACGCAGCCGCATATCGCAAAAGCTATATGGCCGCATCTGGTCTTTAA 377
> AT5G24140.1 | Symbols: SQP2 | squalene monooxygenase 2 | chr5:8164347-8167673
REVERSE LENGTH=1755
Length=1755
Score = 444 bits (240), Expect = 1e-123
Identities = 1156/1582 (73%), Gaps = 128/1582 (8%)
Strand=Plus/Plus
Query 42 TTATGGACGGTACTCGCCTTCGCGCTGACCTGGACGG-TGTTCTACGTTACCAACAGGAA 100
||||||||| | |||||||| | ||||| |||| || | ||| || | | ||| | |||
Sbjct 20 TTATGGACGCTTCTCGCCTTTGTTCTGACATGGATGGTTTTTC-ACCTCATCAAGATGAA 78
Query 101 GAAAAAGGCGA-CGGA-A-TTGGCGGATGCGGCAGCAGAGGAGAGAAGAAACGGTGCTTC 157
||| ||| | |||| | || | || | ||||| | || | |||||| | ||||| |
Sbjct 79 GAAGGCGGCAACCGGAGATTTAGAGGCCGAGGCAG-A-AGCA-AGAAGAGATGGTGCAAC 135
Query 158 TGACGTCATCATCGTCGGGGCTGGTGTCGGTGGCTCGGCTCTTGCATATGCTCTT-GCTA 216
|| |||||||| || ||||| ||||| | ||| | ||||||| |||||| || ||||
Sbjct 136 GGATGTCATCATTGTTGGGGCGGGTGTTGCAGGCGCTTCTCTTGCTTATGCT-TTAGCTA 194
Query 217 AGGACGGACGTCGAGTACATGTGATTGAGAGGGACATGAGAGAACCAGAGAGAATGATGG 276
|||| ||||| |||||||||||||| ||||||||| | | ||| ||| | ||| | ||||
Sbjct 195 AGGATGGACGACGAGTACATGTGATAGAGAGGGACTTAAAAGAGCCACAAAGATTCATGG 254
Query 277 GTGAGTTTATGC-AGCCAGGAGGACGAC-TCATGCTT-TCTAAGCTTGGCCTTC-AAGAT 332
| ||| | |||| || | ||||| || | ||||| || | ||||||||| || |||||
Sbjct 255 GAGAGCTGATGCAAG-CGGGAGGTCG-CTTCATG-TTAGCCCAGCTTGGCC-TCGAAGAT 310
Query 333 TGTCTGGATGG-TATAGATGCCCAAAAAGCCACGGGCATGGCAGTTTATAAGGACGGCAA 391
||| |||| || ||||| || ||| |||| | | | ||||| | || ||||| || ||
Sbjct 311 TGTTTGGA-GGACATAGACGCACAAGAAGCGAAGTCCTTGGCAATATACAAGGATGGAAA 369
Query 392 AGAAGC-A-GTCGCATCTTTTCC-GGTGGACAATAACAATTTTCCTTACGATCCTTCT-G 447
| | || | | || ||||||| | | ||| || | ||||||| | || || | |
Sbjct 370 ACACGCGACATTGC--CTTTTCCAGAT-GAC---AAGAGTTTTCCTCATGAGCC-AGTAG 422
Query 448 CTCGATCT-TTTCACAATGGCCGATTCGTCCAAAGTCTGCGCCAAAAGGCTTCTTCTCTT 506
| || || || | ||||| || | || ||| || | |||||||| || ||||||||
Sbjct 423 GTAGA-CTCTTACGTAATGGTCGGCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTT 481
Query 507 -TCTAGTGTGCGCCTGGAAGAAGGAACGGTGAAGTCGTTAATAGAAGAAAAAGGAGTGAT 565
| | ||| | | ||||||||||| |||||||| ||||| |||||| |||||||| |
Sbjct 482 AGC-AATGTTCAATTAGAAGAAGGAACAGTGAAGTCTTTAATTGAAGAAGAAGGAGTGGT 540
Query 566 CAAAGGAGTGACATACAAAAACAAAGCAGGCGAAGAAACAACAGCATTGGCGCCTCTCAC 625
||||||||||||||||||||| | ||||||||||||| ||| || || || ||||| ||
Sbjct 541 CAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAATAACGGCCTTTGCACCTCTTAC 600
Query 626 TGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTAAACGATAACAATGCGGA 685
||| |||||||| ||||| || || |||||||||||||| || ||||| | || |||
Sbjct 601 TGTCGTATGCGATGGTTGTTATTCGAACCTTCGTCGGTCACTCGTGGATAATACTGAGGA 660
Query 686 GGTTTTGTCTTACCA-AGTTGGTTACATCTCGAAGAATTGTCGGCTTGACGATCCCGAAA 744
|| | || || || || |||||| || |||||||| | || ||||| |||||| | |
Sbjct 661 AGTCCTCTCGTA-CATGGTGGGTTACGTCACGAAGAATAGCCGACTTGAAGATCCCCATA 719
Query 745 ACCTTCATTTGATAATGTCTAAACCCTCCTCCATCATG-T-TGTACCAACTAAGCAG-CA 801
|| ||||||||| | |||||| ||| | | || | | || ||| ||| ||| |
Sbjct 720 GTCTACATTTGATATTTTCTAAA-CCT-TTGGTTTGTGTTATATATCAAATAACCAGTGA 777
Query 802 CTGATGTTCGTTGTGGTTTTG-AGCTTTTCCC-C-GACAATTTTCCTTCTAT-TGCAAAA 857
||| ||||||||| | ||| | ||||| | || | | |||||||||| | | ||
Sbjct 778 -TGAAGTTCGTTGT-G--TTGCCGAAGTTCCCGCTGATAGTATTCCTTCTATAT-CGAAT 832
Query 858 GGTGAAATGGCTA-CTTTCGCGAAGAACACTC--TAGCTCCTCAGGTACCT----C--CA 908
||||||||| ||| ||| | | ||||| | || | ||||||||| ||||| | |
Sbjct 833 GGTGAAATGTCTACCTTCCTC-AAGAA-A-TCAATGGCTCCTCAGATACCTGAAACTGGA 889
Query 909 AAACTTCGCAAAATATTCTTGAAAGGTC-TAGATG-AGG--GAGCACACATAAAAGCGGT 964
|| ||||| | ||||| |||||||| | |||| | ||| | || | |||||| |
Sbjct 890 AATCTTCGGGAGATATTTTTGAAAGG-CATAGAGGAAGGATTACCAGAGATAAAATC--- 945
Query 965 TCCAGC-A--AAGCGCATGACAGCTACTTTAAGCAATAAAAAAGGAGTGATTGTGTTGGG 1021
|||| | || | ||| || | | || | |||||| ||||||||||||||||||
Sbjct 946 AACAGCGACGAAAAGTATGTCATCGAGATTGTGTGATAAAAGAGGAGTGATTGTGTTGGG 1005
Query 1022 AGATGCATTCAACATGCGTCATCC-ATCAGTCGCGGCTGGAATGATGGTTTTATTGTCTG 1080
|||||||||||| ||||||||||| || | ||||| | |||||||||||| | | || |
Sbjct 1006 AGATGCATTCAATATGCGTCATCCTATAA-TCGCGTCAGGAATGATGGTTGCACTCTCGG 1064
Query 1081 ATATTCT-CATTCTACGTCG-TCTTCTCCAGCCACTAAGC--AACCTCGGTGATGCAAAC 1136
| ||| | ||||||||| | ||||||| | ||| | || |||||| | || | ||
Sbjct 1065 ACATT-TGCATTCTACG-CAATCTTCTCAAACCATT--GCCTAACCTCAGCAATACTAAG 1120
Query 1137 AAAGTCTCAGAAGTCAT-T-AAGTCCTTTTATAGCATCCGCAAGCCAATGTCAGCGACGG 1194
|||||||| || || | | ||||||||||| | |||||||||||||||||||||||| |
Sbjct 1121 AAAGTCTCTGA--TCTTGTCAAGTCCTTTTACATCATCCGCAAGCCAATGTCAGCGACCG 1178
Query 1195 TGAACACATTAG-GA--ACTGCATTTTCTCAAGTGCTAATTGC-ATCAACGGACGAAGCA 1250
||||||| | | || | | | ||||| |||||||| |||| | |||| |||||||||
Sbjct 1179 TGAACACGCTCGCGAGTA-T-C-TTTTCACAAGTGCTTGTTGCTA-CAACAGACGAAGCA 1234
Query 1251 AAAGAAGCAATGAGACAGGGTTGCTATGA-TTACCTTTG-TAGTGGCGGTTTTCGCACGT 1308
| ||| | |||| |||| || |||| | | |||||| | | |||| | |||| ||
Sbjct 1235 AGAGAGGGAATGCGACAAGGCTGCT-TCAATTACCTA-GCTCGTGGAGATTTTAAAACA- 1291
Query 1309 CAGGG-AT-GATGGCTCTACTAGGTGGCATGAATCCTCGTCCGATCT--CTCTCATTTAT 1364
|||| || |||| || | || || |||||||| |||| || ||| |||| | | |
Sbjct 1292 -AGGGGATTGATGACTATTCTCGGAGGCATGAACCCTCACCC--TCTTACTCT-AGTCCT 1347
Query 1365 -CATCTCTGC-GCTATCACACT-ACATTCCATTGGCCATCTT-CTCTCTCCATTTCCTTC 1420
||||| || || ||||| || || | |||| ||||| ||| |||||||| ||||||||
Sbjct 1348 TCATCT-TGTAGCCATCACCCTTACGT-CCATGGGCCA-CTTGCTCTCTCCGTTTCCTTC 1404
Query 1421 CCC-CATTCGCATTTGGCATAGCCTCAGGCTTTTTGGTTTAGCTTTGAAAATGTTGGTTC 1479
|| | | ||| |||||||||||||||| || ||| | |||||| ||||||||| |
Sbjct 1405 GCCTCGT-CGCTTTTGGCATAGCCTCAGAATTCTTGCCTGGGCTTTGCAAATGTTGGGTG 1463
Query 1480 CCCATCTCAA-GGCTGAGGGAGTT-A-GCCAGATGTTGTTTCCTGCAAACGCAGCCGCAT 1536
| ||| | | || ||| ||| || | | | |||||| |||| |||||||||| || |
Sbjct 1464 CACATTT-AGTGGATGAAGGA-TTCAAGGAA-ATGTTGATTCCAACAAACGCAGCTGCTT 1520
Query 1537 ATCGCAA--AAGCTATATGGCC 1556
|||| || || |||||| |||
Sbjct 1521 ATCG-AAGGAA-CTATATCGCC 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78563852925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5