BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942018 Length=490 Score E Sequences producing significant alignments: (Bits) Value AT5G24610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 695 0.0 > AT5G24610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8428078-8429253 FORWARD LENGTH=801 Length=801 Score = 695 bits (376), Expect = 0.0 Identities = 457/493 (93%), Gaps = 18/493 (4%) Strand=Plus/Plus Query 3 TCAGATTCA-AAGAATAAGATGGAGGTATTTGGAAAATCTCCCAT-G--GTTACATCTGC 58 ||||| ||| | ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 107 TCAGA-TCACAGGAATAAGATGGAGGTATTTGGAAAATCTCCCATGGTTGTTACATCTGC 165 Query 59 CAATGTTATTTACTTGTCTGCAATTCTGGGTCGCGATTGCGATGGACCCAACCAGTCTCA 118 ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 166 CAATGTTATTTACTTGTCTGCAATTCTGGGTCGCGATTGCGATGG--------A----CA 213 Query 119 CAAATGTGATTGGAAATGTGAGAATGAAATTGTTTGTGGGAATATGTATCGCTGCAAACT 178 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 214 CAAATGTGATTGGAAATGTGAGAATGAAAATGTTTGTGGGAATATGTATCGCTGCAAACT 273 Query 179 AACTGGGCTGACTCATGTCTGCGACAAGAACTGTAATCAGCGGATTCTCTATGATAACCA 238 |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 274 AACTGGACTAACTCATGTCTGCGACAAGAACTGTAACCAGCGGATTCTCTATGATAACCA 333 Query 239 TAGCTCTTTGTGCCGAGCCAGCGGGAGGATTTTCCCTCTCTCATCGGTTGAGGAGCAGGC 298 ||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||| Sbjct 334 TAGCTCTTTGTGCCGAGCCAGTGGGAGGATTTTCCCTCTCTCGTCCGTCGAGGAGCAGGC 393 Query 299 GGTTAAAGGGGTTCGGAGGAAGCTTGACGCTGCTGAGAGTCATCCTTCTGAGAGTTGTTC 358 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 394 GGTTAAAGGTGTTCGGAGGAAGCTTGACGCCGCTGAGAGTCATCCTTCTGAGAGCTGTTC 453 Query 359 GTTTAAGCGTCGTCGTCGTGATGCTCAGTTTCACGCTTCTCCTTTCGAGAGGTCTTTTAC 418 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 454 GTTTAAGCGTCGTCGTCGTGATGCTCAGTTCCATGCTTCTCCTTTCGAGAGGTCTTTTAC 513 Query 419 TGCTGTGAGCCCCATCTGCAGCCCAGCTGGAGACGGAATGGAGTTGATTTAGAT-CCATG 477 |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||| Sbjct 514 TGCTGTGAGCCCTATCTGCAGCCCGGCTGGAGACGGAATGGAGTTGGTTTAGATTCCATG 573 Query 478 TTGATCTCCTCAA 490 ||||||||| ||| Sbjct 574 TTGATCTCCGCAA 586 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23358878355 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5