BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942018

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24610.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   695    0.0  


> AT5G24610.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G49550.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:8428078-8429253 FORWARD LENGTH=801
Length=801

 Score =  695 bits (376),  Expect = 0.0
 Identities = 457/493 (93%), Gaps = 18/493 (4%)
 Strand=Plus/Plus

Query  3    TCAGATTCA-AAGAATAAGATGGAGGTATTTGGAAAATCTCCCAT-G--GTTACATCTGC  58
            ||||| ||| | ||||||||||||||||||||||||||||||||| |  |||||||||||
Sbjct  107  TCAGA-TCACAGGAATAAGATGGAGGTATTTGGAAAATCTCCCATGGTTGTTACATCTGC  165

Query  59   CAATGTTATTTACTTGTCTGCAATTCTGGGTCGCGATTGCGATGGACCCAACCAGTCTCA  118
            |||||||||||||||||||||||||||||||||||||||||||||        |    ||
Sbjct  166  CAATGTTATTTACTTGTCTGCAATTCTGGGTCGCGATTGCGATGG--------A----CA  213

Query  119  CAAATGTGATTGGAAATGTGAGAATGAAATTGTTTGTGGGAATATGTATCGCTGCAAACT  178
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  214  CAAATGTGATTGGAAATGTGAGAATGAAAATGTTTGTGGGAATATGTATCGCTGCAAACT  273

Query  179  AACTGGGCTGACTCATGTCTGCGACAAGAACTGTAATCAGCGGATTCTCTATGATAACCA  238
            |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  274  AACTGGACTAACTCATGTCTGCGACAAGAACTGTAACCAGCGGATTCTCTATGATAACCA  333

Query  239  TAGCTCTTTGTGCCGAGCCAGCGGGAGGATTTTCCCTCTCTCATCGGTTGAGGAGCAGGC  298
            ||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||
Sbjct  334  TAGCTCTTTGTGCCGAGCCAGTGGGAGGATTTTCCCTCTCTCGTCCGTCGAGGAGCAGGC  393

Query  299  GGTTAAAGGGGTTCGGAGGAAGCTTGACGCTGCTGAGAGTCATCCTTCTGAGAGTTGTTC  358
            ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  394  GGTTAAAGGTGTTCGGAGGAAGCTTGACGCCGCTGAGAGTCATCCTTCTGAGAGCTGTTC  453

Query  359  GTTTAAGCGTCGTCGTCGTGATGCTCAGTTTCACGCTTCTCCTTTCGAGAGGTCTTTTAC  418
            |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  454  GTTTAAGCGTCGTCGTCGTGATGCTCAGTTCCATGCTTCTCCTTTCGAGAGGTCTTTTAC  513

Query  419  TGCTGTGAGCCCCATCTGCAGCCCAGCTGGAGACGGAATGGAGTTGATTTAGAT-CCATG  477
            |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct  514  TGCTGTGAGCCCTATCTGCAGCCCGGCTGGAGACGGAATGGAGTTGGTTTAGATTCCATG  573

Query  478  TTGATCTCCTCAA  490
            ||||||||| |||
Sbjct  574  TTGATCTCCGCAA  586



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23358878355


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5