BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942027
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24690.1 | Symbols: | Protein of unknown function (DUF3411)... 2662 0.0
> AT5G24690.1 | Symbols: | Protein of unknown function (DUF3411)
| chr5:8455457-8458751 REVERSE LENGTH=2130
Length=2130
Score = 2662 bits (1441), Expect = 0.0
Identities = 1551/1605 (97%), Gaps = 3/1605 (0%)
Strand=Plus/Plus
Query 2 TTTTAATCCTGGTGAAGCCATGTCGCATATGGTGTTTCAGAGCGTTGTCGCTCCCAAACC 61
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 220 TTTTAATCCTGGTAAAGCCATGTCACATATGGTGTTTCAGAGCGTTGTCGCTCCCAAACC 279
Query 62 CTTATCTCCTCTCAAACCCTGTTTACCTATCCCTCGTCCACTCGTTACTCTGCCTTGTAA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 CTTATCTCCTCTCAAACCCTGTTTACCTATCCCTCGTCCACTCGTTACTCTGCCTTGTAA 339
Query 122 GCTCCGTCGCGGCTTCGTTAGAG---CTTCGTCCGCTTTTCTTGTCGATGATTCAGTATC 178
||||||||| ||||||||||||| |||||||| | |||||||||||||||||||| ||
Sbjct 340 GCTCCGTCGTGGCTTCGTTAGAGCTTCTTCGTCCTCGTTTCTTGTCGATGATTCAGTTTC 399
Query 179 AGGTCTCGAGCGTTGCTTACAGTTACCTTCGGGAGTTGAGTTAGGCCCATCTTCCTCTGG 238
||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 400 AGGACTCGAGCGTTGCTTACAGTTACCTTCTGGAGTTGAGTTAGGCACATCTTCCTCTGG 459
Query 239 CTCTTTCTCTGCAAGTACTCAGATGTGTCCTGTGATGAAAGGGAAATTTGGTTCGGTAGG 298
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 460 CTCTTTCTCTGCAAGTACTCAGATGTGTCCTGTGATGAAAGGCAAATTTGGTTCGGTAGG 519
Query 299 AGCTGTAACTTTGGAAAAAGGGAAGCTTGATATGACCCAGAAGATTTCTGAGACCAGCCC 358
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 520 AGCTGTTACTTTGGAAAAAGGGAAGCTTGATATGACCCAGAAGATTTCTGAGACTAGCCC 579
Query 359 TGAGATTGCAACTGGAGGAGGTGGTGGAAACATTGGAAAGAGTATCAATAACGGTGGTGG 418
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 580 TGAGATTGCAACTGGAGGAGGGGGTGGAAACATTGGAAAGAGTATCAATAATGGTGGTGG 639
Query 419 Cgatggaggtgacgataatggtgatgatgatgattattttgatgaatttgatgatggcga 478
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 640 CGATGGAGGTGACGATAATGGTGATGATGATGATTACTTTGATGAATTCGATGATGGTGA 699
Query 479 tgagggagatgatgatgGACTTTTTAGGCGTAGGATGTTCCTCGCAGAGATTTTTGATAG 538
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 700 TGAGGGAGATGATGATGGACTTTTTAGGCGTAGGATGTTTCTCGCAGAGATTTTTGATAG 759
Query 539 GAAATTTGTTGATGCTGTGTTGAACGAATGGCAAAAAACAATGATGGATTTACCTGCTGG 598
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 760 GAAATTCGTTGATGCTGTGTTGAATGAATGGCAAAAAACAATGATGGATTTACCTGCCGG 819
Query 599 TCTCCGTCAAGCATATGAAATGGGTTTGGTCAGCTCAGCACAAATGGTGAAATTCCTTGC 658
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 820 TCTCCGTCAAGCATATGAAATGGGTTTGGTCAGCTCAGCTCAAATGGTGAAATTCCTTGC 879
Query 659 TATAAATGCCCGTCCTACAACAACTAGAATGATCTCCCGTGCTCTTCCTCAGGGATTGTC 718
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 880 CATAAATGCCCGTCCTACAACGACTAGAATGATCTCCCGTGCCCTTCCTCAGGGATTATC 939
Query 719 GAGGGCCTTTGTTGGCAGGATGTTGGCGGATCCTGCATTTCTGTATAAACTTCTTTTGGA 778
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 940 GAGGGCCTTTGTTGGCAGGATGTTGGCGGATCCTGCATTTCTCTATAAACTTCTTTTGGA 999
Query 779 GCAAGCTGCCACGGTTGGATGCTCGGTTTGGTGGGAGGTGAAGAATCGTAAGAATAGACT 838
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1000 GCAAGCTGCCACGGTTGGATGCTCAGTTTGGTGGGAGGTGAAGAATCGTAAGAATAGACT 1059
Query 839 AAAAGAGGAATGGGATCTTGCACTTATAAATGTTCTTACTGTATCAGCATGCAATGCAGC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AAAAGAGGAATGGGATCTTGCACTTATAAATGTTCTTACTGTATCAGCATGCAATGCAGC 1119
Query 899 TGCTGTTTGGTTGCTAGCTCCATGTCGTTCCTATGGAAACACATTCCGGTTTGACCTGCA 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TGCTGTTTGGTTACTAGCTCCATGTCGTTCCTATGGAAACACATTCCGGTTTGACCTGCA 1179
Query 959 AAATACACTACAAAAGTTACCAAATAATTTATTTGAAATGAGCTATCCTCTTAGAGAGTT 1018
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 AAATACATTACAAAAGCTACCAAATAATTTATTTGAAATGAGCTATCCTCTTAGAGAGTT 1239
Query 1019 CGACTTGCAAAAGAGATTTCATTCTCTTTTCTACAAGGCTGCAGAGTTGTCCATTCTTGG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 CGACTTGCAAAAGAGATTTCATTCTCTTTTCTACAAGGCTGCAGAGTTGTCCATTCTTGG 1299
Query 1079 ACTCGCAGCAGGAACTCTCCAGGGTTCGTTGTCAAACTTTCTGGCAGGAAAGAAGAAGAA 1138
||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1300 ACTCGCAGCAGGAACACTCCAGGGTTCGTTGTCAAACGTTCTAGCAGGAAAGAAGAAGAA 1359
Query 1139 CAGAGTATCTGTGACGGTCCCATCTATCAGCACAAATGCTCTTGGTTATGGTGCATTTCT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 CAGAGTATCTGTGACGGTCCCATCTATCAGCACAAATGCTCTTGGTTATGGTGCATTTCT 1419
Query 1199 TGGAATATATGCGAACTTGAGATATCAGCTGTTATGTGGATTTGAAAGAGGAGTGAGCAG 1258
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TGGAATATATGCCAACTTGAGATATCAGCTGTTATGTGGATTTGAAAGAGGAGTGAGCAG 1479
Query 1259 CCACTTTGATGTCATAGGAGTTGCACTCTTCTTCGGCACTGCCTTGAGGATTATGAATGT 1318
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TCACTTTGACGTCATAGGAGTAGCACTCTTCTTCGGCACTGCCTTGAGGATTATGAATGT 1539
Query 1319 TCAATTAGGGGAAAAGTCAAGACAGGTATGGCTAGGTGTGGAGGCAGACCCACTGGCGCA 1378
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1540 GCAATTAGGGGAAAAGTCAAGACAAGTATGGCTAGGTGTAGAGGCAGACCCACTGGCGCA 1599
Query 1379 GTCAGATGATCTGCTGGCAAAAGCATACAACCGACCCTCAGAGGAAGCAGTAGCAAAACC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1600 GTCAGATGATCTGCTGGCAAAAGCATACAACCGACCCTCAGAGGAAGCAGTAGCAAAGCC 1659
Query 1439 ATCTTCAAGATGGTTCATCTCAAAGAATGCAATTGTCTCAGGGCTGCTTGGGAAGAAGCA 1498
|||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1660 ATCTTCAAAATGGTTCATCTCAAAGAATGCAATTGTCTCAGGGCTACTCGGGAAGAAGCA 1719
Query 1499 AGAGGACTCAGTTTCAGATCCTCCACCTCCAAAGGCTAGACGAAAAAGGATTGTGAGGAA 1558
||| || |||||||||||| ||||||||||||||||| | ||||||||||| ||||||||
Sbjct 1720 AGAAGATTCAGTTTCAGATTCTCCACCTCCAAAGGCTCGGCGAAAAAGGATAGTGAGGAA 1779
Query 1559 GAAGGTGGCTGCATCTGCCTCTTAAATAACCAACAAAACCTCTAA 1603
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 GAAGGTGGCTGCATCTGCCTCTTAAATAACCAACAAAACCTCTAA 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79166259465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5