BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942030
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24750.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2418 0.0
> AT5G24750.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:8490572-8494587 REVERSE LENGTH=1863
Length=1863
Score = 2418 bits (1309), Expect = 0.0
Identities = 1525/1626 (94%), Gaps = 27/1626 (2%)
Strand=Plus/Plus
Query 1 CTTCATCGGAGCATTTGAGC-AC-C-ATGGAGGAGGAACCGGAGAGAAGGAAAGCCATCG 57
||||||||||||| |||||| || | ||||||||||||||||||||||||||||| ||||
Sbjct 27 CTTCATCGGAGCA-TTGAGCAACACAATGGAGGAGGAACCGGAGAGAAGGAAAGCTATCG 85
Query 58 CTCTCTTCATGGCTTTTGGTACCAAAGGCGATATCTACCCTCTCGCTGCCATTGCCGCAG 117
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 86 CTCTCTTCATGGCTTTCGGTACCAAAGGCGATGTCTACCCTCTCGCTGCCATTGCCGCAG 145
Query 118 CTTTCGCTCGTGTTCAGCAACACTACTCTGTGGTTTTGATGTCACATTTGGCTCATGAGA 177
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 146 TTTTCGCTCGTGTTCAACAACACTACACTGTGGTTTTGATGTCACATTTGGCTCATGAGA 205
Query 178 ACCTAAGCTCTCACTTGAACAAAGCAAACGTTTCCTATCTTCCTATCAATTCTCCTCCTG 237
|||||||||| || |||| |||||||| ||||| ||| |||||||||||||||||||||
Sbjct 206 ACCTAAGCTCCCATTTGAGTAAAGCAAAAGTTTCATATTTTCCTATCAATTCTCCTCCTG 265
Query 238 CTCTGTCTAGTGAACCTCAGGGTACTCAAAACGCCGCAGGTCAATACTCTGATTTTAAGA 297
||||||||| ||||||||||||||||||||||| || | | |||| | | | ||
Sbjct 266 CTCTGTCTAATGAACCTCAGGGTACTCAAAACG--TCA---C-AGACTC-G--CTGAGGA 316
Query 298 AACTATTTTTGGAGGAAAAAGAAAAGATAAAAAGGGATCACAGAGAAGAGTGTCATTCTG 357
|| | ||||||||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 317 AAATGTTTTTGGAGGAAAAAGAAAGGATAAAAAGGGAACACAGACAAGAGTGTCATTCTG 376
Query 358 CATTCAAAAGCATTTTCGGAAAGGGTCCTTGTATGGAGGGTGATTTCGTTGTCATAAATT 417
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 377 CATTCAGAACCATTTTCGGAAAGGATCCTTGTATGGAGGGTGATTTCGTTGTCATAAATT 436
Query 418 TCTTTGCATTGGAAGGATGGAGCCTTGCAGAACTTTTCCAAATCCGTTGTGTGGTGGCGG 477
||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
Sbjct 437 TCTTTGCATTGGAAGGATGGAGCCTAGCAGAAGTTTTCCAGATCCGTTGTGTGGTGGCTG 496
Query 478 CTCCTTATGTTGTTCCGTATAGTCCACCATCAGGCTTTGAAAGACAGTTTAGGAAGGAAC 537
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 497 CTCCTTATGTTGTTCCGTATAGTCCACCATCAGGCTTTGAAAGACAGTTTAGAAAGGAGC 556
Query 538 TCCCAGATTTGTACAAGTACTTGAAAGAAGCCCCCATCGGCAAGGTTAGCTGGAGTGATG 597
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 557 TACCAGATTTATACAAGTACTTGAAAGAAGCCCCCATAGGCAAGGTTAGCTGGAGTGATG 616
Query 598 TAACTCATTGGATGTGGCCTCTTTTTACTGAAGAATGGGGATCGTGGCGCTACGAGGAAC 657
|||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct 617 TAACTCATTGGATGTGGCCTCTTTTTACTGAAGAGTGGGGATCATGGCGATATGAGGAAC 676
Query 658 TCAACCTAAGTTGTTACCCTTTTGCAGATCCAGTAACAGACCTTCCAATTTGGCGTAGCC 717
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 677 TCAACCTTAGTTGTTACCCTTTTGCAGATCCAGTAACAGACCTTCCAATTTGGCATATCC 736
Query 718 GGCCGCCATCTCCTTTGGTCTTGTATGGTTTCAGCAAAGAAATCGTCGAATGCCCTGATT 777
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 737 GGCCGCCATCTCCCTTGGTCTTGTATGGTTTCAGCAAAGAAATCGTTGAATGCCCTGATT 796
Query 778 ACTGGCCATTGAGCGTTCGAGCT-TGCGGCTTTTGGTTTCTGCCCAATGAATGGCAGTTT 836
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 797 ACTGGCCATTGAGCGTTCGAG-TCTGCGGCTTTTGGTTTCTGCCCAATGAATGGCAGTTT 855
Query 837 TCATGCAACAAGTGTGGAGACAATCCTTTTACAGGGCGCCTGGGTACAGACGATTCCCAT 896
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 856 TCATGCAACGAGTGTGGAGACAATCCTTTTGCAGGGCGCCTGGGTACAGACGATTCACAT 915
Query 897 ACATGCTCAAACCACTCTGAGTTGTATACTTTTATATCGTCTTGTGAGCCAGAACTGCCT 956
||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 916 ACATGCTCAAACCACACTGAGTTATATACATTTATATCGTCTTGTGAGCCAGCTCTGCCT 975
Query 957 ATCTTTGTAGGGTTGAGTTCTGTTGGAAGCATGGGCTTTGTAAGGGATCCCATAGCCTTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 ATCTTTGTAGGGTTGAGTTCTGTTGGAAGCATGGGCTTTGTAAGGGATCCCATAGCCTTT 1035
Query 1017 CTTCGAGTTCTCCAATCTGTTATCCAGATTACAGGTTACAGATTTATCATTTTCACAGC- 1075
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1036 CTTCGAGTTCTCCAATCTGTTATTCAGATTACAGGTTACAGATTTATCATTTTCACAGCT 1095
Query 1076 AGGTTATGGACCTTTAGATGCAGCAATTTGGACCATTGCTAATAGATCAGATTCAAGTGA 1135
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1096 A-GTTATGGACCTTTAGATGCAGCAATTAGGACCATTGCTAATGGATCAGATTCAAGTGA 1154
Query 1136 GAAACAACCGTTACATGCAGGAATCTCTATTTTCAACGGCAAGCTTTTCTGCTTCCCTGG 1195
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1155 GAAACAACCGTTACATGCGGGAATCTCTATTTTCAACGGCAAGCTTTTCTGCTTCTCTGG 1214
Query 1196 TATGGTGCCATACAAGTGGATGTTTCAAAGATGCGCTGCAGCAATTCATCATGGTGGCAG 1255
||||||||||||||| |||||||| | || |||||||||||| |||||||| ||||||||
Sbjct 1215 TATGGTGCCATACAACTGGATGTTCCGAACATGCGCTGCAGCGATTCATCACGGTGGCAG 1274
Query 1256 CGGTTCTGTTGCTGCAGCATTACAGGCTGGAATCCCGCAGATCATATGCCCATTTATGCT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 CGGTTCTGTTGCTGCAGCATTACAGGCTGGAATCCCGCAGATCATATGCCCATTTATGCT 1334
Query 1316 GGATCAGTTCTATTGGGCAGAAAAGATGTCTTGGCTTGGAGTTGCTCCTCAACCATTGAA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 GGATCAGTTCTATTGGGCAGAAAAGATGTCTTGGCTTGGAGTTGCTCCTCAACCATTGAA 1394
Query 1376 AAGAATCCACCTGCTTCTAGAGGAAC-CAAATGATGA-AA-AA-ATCATGGAAGCTGCAC 1431
||||| |||||||||||||||||| | |||||||||| || || |||| |||||||||||
Sbjct 1395 AAGAAACCACCTGCTTCTAGAGGA-CTCAAATGATGAGAAGAACATCACGGAAGCTGCAC 1453
Query 1432 AAGTGGTAGCAAAAGCCATATACGATGCACTGTCTGCAAAAAGTAGGGCTTGTGCGATGG 1491
|||||||||| ||||||||||||||||||||||||||||| | ||||||| |||| ||||
Sbjct 1454 AAGTGGTAGCGAAAGCCATATACGATGCACTGTCTGCAAAGACTAGGGCTCGTGCCATGG 1513
Query 1492 AAATTGCTGAAATATTATCTCTTGAGGATGGAGTCACAGAAGCTGTGAGAGTGCTTAGAG 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 AAATTGCTGAAATATTATCTCTTGAGGATGGAGTCACAGAAGCTGTGAGAGTGCTTAGAG 1573
Query 1552 AAGAGGTGTGTGT--TT-CAGGCAGCAACCGAATGTTTGGATGAGCATCGTCATATA--C 1606
||||||||||||| || |||||||||||||||| ||| ||||||||| |||||||| |
Sbjct 1574 AAGAGGTGTGTGTAGTTTCAGGCAGCAACCGAATATTTTGATGAGCATTGTCATATATAC 1633
Query 1607 AACGTA 1612
||||||
Sbjct 1634 AACGTA 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79618064370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5