BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942058
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24990.1 | Symbols: | Protein of unknown function (DUF1336)... 1240 0.0
AT5G25010.1 | Symbols: | Protein of unknown function (DUF1336)... 1051 0.0
AT5G25020.1 | Symbols: | Protein of unknown function (DUF1336)... 599 2e-170
> AT5G24990.1 | Symbols: | Protein of unknown function (DUF1336)
| chr5:8610537-8611694 FORWARD LENGTH=1158
Length=1158
Score = 1240 bits (671), Expect = 0.0
Identities = 844/925 (91%), Gaps = 21/925 (2%)
Strand=Plus/Plus
Query 1 TCAACGAATCACCACACGCCATGaaccaaaccaaaaccaccaccgacaacgataacaaaa 60
||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 36 TCAACAAATCA-CACACGCCATGAACCAAACCAAAACTACCACCG---ACGATAACAAAA 91
Query 61 actccaaaccggccaaaaccGAATCAATCACCACCGTACCGGAATGGATAACCGAAACAA 120
|||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 92 ACTCCAAACCGGCCGAAACCGAATCAACCATCACCGTACCGGAATGGATAACCGAAACAA 151
Query 121 TCAACGGTGGATCATTCCGCCACGTAGATCTCGAAACCGGAACCAACGGCTGGGCTTCAC 180
|||||||||| || ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 152 TCAACGGTGGCTCCTTCTGCCACGTAGATCTCGAGACCGGAACCAACGGCTGGGCTTCAC 211
Query 181 CACCAGGCAACGTCTTCTCTCTCCGCTCCCATAACTACTTCA---CCACAAAACAAAAAT 237
||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 212 CACCAGGCAACGTGTTCTCTCTCCGCTCACATAACTACTTCACCGCCACAAAACAAAAAT 271
Query 238 CTCCCGGCGGCGATTACCTCCTCTCTCTCGCCGCCGTAGACTGGCTCAAATCCACCACAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CTCCCGGCGGCGATTACCTCCTCTCTCTCGCCGCCGTAGACTGGCTCAAATCCACCACAA 331
Query 298 ACAAACTCGATCACATCCTCTCTCGTCCCGATAACCGTGTAATCCACGCACTCAAAACCT 357
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 332 AGAAACTCGATCACATCCTCTCTCGTCCCGATAACCGTGTAATCCACGCTTTCAAAACAT 391
Query 358 CCCATTCTCGTAGCTTCATCTTCGCCGTCAATTTCCAGATCCCAGGCAAAGAACACTACA 417
|||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 392 CCCAATCTCGTAGCTTCATCTTCGCCGTTAATTTCCAGGTCCCAGGGAAAGAACACTACA 451
Query 418 ATTTTGTCTTCTACTTCGCAACACAAAAACCAATCCCTTCCGATTCACTCCTCCACAAAT 477
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 ACTTGGTCTTCTACTTCGCAACACAAAAACCAATCCCTTCCGATTCACTCCTCCACAAAT 511
Query 478 TCATCAATGTAGACGACAG-TTCATTTCGCGACGAGAGATTCAAGATCGTTAGCAATGTT 536
|||||||| |||||| || ||| |||||| ||||||||||||| |||||||||||||||
Sbjct 512 TCATCAATACAGACGA-AGATTCGTTTCGCAACGAGAGATTCAAAATCGTTAGCAATGTT 570
Query 537 GTGAAAGGTCCTTGGGTTGTTAAAGCAGCAGCTGGGAAATTTGGTGCGTTTGTTGTTGGT 596
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 571 GTGAAAGGTCCTTGGGTTGTTAAAGCAGCAGCTGGGAAATTTGGTGCATTTGTTGCTGGG 630
Query 597 AAGACTGTGAAATGTAGTTATTATAGAGGAGTTGATTATTTTGAGATTGATGTTGATATT 656
||| || |||| |||| |||||||||||||| | ||||||||||| |||||||||||||
Sbjct 631 AAGGCTATGAAGTGTACTTATTATAGAGGAGATAATTATTTTGAGGTTGATGTTGATATA 690
Query 657 AGTAGCTCGGCGATTTTGGCGGCGCTTGTGAGGTTGATGTTGGGGTATGTTACG-AGTTT 715
||||||||||||||| || |||||||| | ||||| |||||||||||||||||| | |||
Sbjct 691 AGTAGCTCGGCGATTATGACGGCGCTTATTAGGTTTATGTTGGGGTATGTTACGTA-TTT 749
Query 716 GATGGTTGATGTTTGTTTTGTTGTGGAAGCGCAAACGGAGGAGGAGTTGCCGGAGAGATT 775
||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 750 AATGGTTGATATTGGTTTTGTTGTGGAAGCGCAAACGGCGGAGGAGTTGCCGGAGAGATT 809
Query 776 GATTGGTGGTGCTAGGATTTGTCATATGGAGTTATCGTCGGCGTTTGTAGTtgatgatga 835
||||||||||||||||||||||||||||||||| || ||| ||||| | |||||||||||
Sbjct 810 GATTGGTGGTGCTAGGATTTGTCATATGGAGTTGTCCTCGTCGTTTTTGGTTGATGATGA 869
Query 836 tgatgatgatgatgatgaGAAGAAGCGACGGCGGAGAATGATGGGTGTGGCGGAAGAAAA 895
|| || || || | | | | | | |||||||||||||||||||| ||||||||| ||
Sbjct 870 CGA-GAAGAAGA-GTTTACA-GC--C-ACGGCGGAGAATGATGGGTGCGGCGGAAGATAA 923
Query 896 CGACGATGGAAGAT--GAGATTTGA 918
|||||||| | ||| |||||||||
Sbjct 924 CGACGATG-A-GATTTGAGATTTGA 946
> AT5G25010.1 | Symbols: | Protein of unknown function (DUF1336)
| chr5:8616009-8616869 FORWARD LENGTH=861
Length=861
Score = 1051 bits (569), Expect = 0.0
Identities = 738/819 (90%), Gaps = 13/819 (2%)
Strand=Plus/Plus
Query 21 ATGaaccaaaccaaaaccaccaccgacaacgataacaaaaactccaaaccggccaaaacc 80
|||||||||||| ||| ||||| ||| || ||||||| || |||||||||| | |||||
Sbjct 1 ATGAACCAAACC-AAA--ACCACTGACGACAATAACAACAATTCCAAACCGGACGAAACC 57
Query 81 GAATCAATCACCACCGTACCGGAATGGATAACCGAAACAATCAACGGTGGATCATTCCGC 140
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 58 GAATCAACCACCACCGTACCGGAATGGATAACCGAAACAATCAACGGTGGATCCTTCCAC 117
Query 141 CACGTAGATCTCGAAACCGGAACCAACGGCTGGGCTTCACCACCAGGCAACGTCTTCTCT 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CACGTAGATCTCGAAACCGGAACCAACGGCTGGGCTTCACCACCAGGCAACGTCTTCTCT 177
Query 201 CTCCGCTCCCATAACTACTTCACCACAAAACAAAAATCTCCCGGCGGCGATTACCTCCTC 260
||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 CTCCGCTCCAACAACTACTTCACCACAAAACAAAAATCTCCCGGCGGAGATTACCTCCTC 237
Query 261 TCTCTCGCCGCCGTAGACTGGCTCAAATCCACCACAAACAAACTCGATCACATCCTCTCT 320
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 238 TCTCTCATCGCCGTAGACTGGCTCAAATCCACCACAAAGAAACTCGATCACATCCTCTGT 297
Query 321 CGTCCCGATAACCGTGTAATCCACGCACTCAAAACCTCCCATTCTCGTAGCTTCATCTTC 380
|||||||||||||||||||||||||| ||| |||| ||||| ||||| || |||||||||
Sbjct 298 CGTCCCGATAACCGTGTAATCCACGCTCTCGAAACATCCCAATCTCGCAGTTTCATCTTC 357
Query 381 GCCGTCAATTTCCAGATCCCAGGCAAAGAACACTACAATTTTGTCTTCTACTTCGCAACA 440
||||| ||||||||||||||||| |||||||||||| | || ||| ||||||||||||||
Sbjct 358 GCCGTGAATTTCCAGATCCCAGGGAAAGAACACTACCACTTAGTCCTCTACTTCGCAACA 417
Query 441 CAAAAACCAATCCCTTCCGATTCACTCCTCCACAAATTCATCAATGTAGACGAC-AGTTC 499
||||||||||||||||||||||| |||||||||||||||||||| |||||||| | | |
Sbjct 418 GAAAAACCAATCCCTTCCGATTCAATCCTCCACAAATTCATCAATATAGACGACGACT-C 476
Query 500 ATTTCGCGACGAGAGATTCAA-GATCGTTAGCAATGTTGTGAAAGGTCCTTGGGTTGTTA 558
|||||| ||||||||||||| | | |||| |||||||||||||||||| ||||| || |
Sbjct 477 GTTTCGCAACGAGAGATTCAAAGTT-GTTACCAATGTTGTGAAAGGTCCATGGGTGGTCA 535
Query 559 AAGCAGCAGCTGGGAAATTTGGTGCGTTTGTTGTTGGTAAGACTGTGAAATGTAGTTATT 618
||||| ||||||||||| | ||||||||| ||| ||| ||| ||||||||||||||| |
Sbjct 536 AAGCAACAGCTGGGAAACTCGGTGCGTTTCTTGCTGGGAAGGTTGTGAAATGTAGTTACT 595
Query 619 ATAGAGGAGTTGATTATTTTGAGATTGATGTTGATATTAGTAGCTCGGCGATTT-TGGCG 677
||||||||| | ||||||||||| ||||||||||| |||||| ||||||||||| | ||
Sbjct 596 ATAGAGGAGCTAATTATTTTGAGGTTGATGTTGATTTTAGTATCTCGGCGATTTATT-CG 654
Query 678 GCGCTTGTGAGG-TTGATGTTGGGGTATGTTACGAGTTTGATGGTTGATGTTTGTTTTGT 736
|| ||||||||| || | ||||||||||||||||| |||| ||| ||||||| |||||||
Sbjct 655 GCACTTGTGAGGCTT-ACGTTGGGGTATGTTACGAATTTGGTGGCTGATGTTGGTTTTGT 713
Query 737 TGTGGAAGCGCAAACGGAGGAGGAGTTGCCGGAGAGATTGATTGGTGGTGCTAGGATT-T 795
|||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| | | |
Sbjct 714 TGTGGAGGCGCAAACGGAGGAGGAGTTGCCCGAGAGATTGATTGGTGGTGGTAG-AGTCT 772
Query 796 GTCATATGGAGTTATCGTCGGCGTTTGTAGTtgatgatg 834
|| ||||||||||||||||||||||| | ||||||||||
Sbjct 773 GTTATATGGAGTTATCGTCGGCGTTTTTGGTTGATGATG 811
> AT5G25020.1 | Symbols: | Protein of unknown function (DUF1336)
| chr5:8618567-8619465 FORWARD LENGTH=810
Length=810
Score = 599 bits (324), Expect = 2e-170
Identities = 376/401 (94%), Gaps = 3/401 (1%)
Strand=Plus/Plus
Query 21 ATGaaccaaaccaaaaccaccaccgacaacgataacaaaaactccaaaccggccaaaacc 80
|||||||||||| |||||||||| ||| |||||||||| || |||||||||||| |||||
Sbjct 1 ATGAACCAAACCGAAACCACCACTGACGACGATAACAACAATTCCAAACCGGCCGAAACC 60
Query 81 GAATCAATCACCACCGTACCGGAATGGATAACCGAAACAATCAACGGTGGATCATTCCGC 140
||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 61 GAATCAACCACCACCGCACCGGAATGGATAACCGAAACAATCAACGGTGGATCCTTCTGC 120
Query 141 CACGTAGATCTCGAAACCGGAACCAACGGCTGGGCTTCACCACCAGGCAACGTCTTCTCT 200
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CACGTAGATCTCGAAACCGGAACCAACGGCTGGGCTTCACCCCCAGGCAACGTCTTCTCT 180
Query 201 CTCCGCTCCCATAACTACTTCA---CCACAAAACAAAAATCTCCCGGCGGCGATTACCTC 257
|||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 181 CTCCGCTCAAATAACTACTTCACCCCCACAAAACAAAAATCTCCTGGCGGCGATTACCTC 240
Query 258 CTCTCTCTCGCCGCCGTAGACTGGCTCAAATCCACCACAAACAAACTCGATCACATCCTC 317
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CTCTCTCTCGCCGCCGTAGACTGGCTCAAATCCACCACAAAGAAACTCGATCACATCCTC 300
Query 318 TCTCGTCCCGATAACCGTGTAATCCACGCACTCAAAACCTCCCATTCTCGTAGCTTCATC 377
||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||
Sbjct 301 TCTCGTCCCGATAACCGTGTAATCCACGCTCTCAAAACATCCCAATCTAGTAGCTTCATC 360
Query 378 TTCGCCGTCAATTTCCAGATCCCAGGCAAAGAACACTACAA 418
|||||||| ||||||||| ||||||| ||||||||||||||
Sbjct 361 TTCGCCGTTAATTTCCAGGTCCCAGGGAAAGAACACTACAA 401
Score = 499 bits (270), Expect = 2e-140
Identities = 349/387 (90%), Gaps = 6/387 (2%)
Strand=Plus/Plus
Query 512 GAGATTCAAGATCGTTAGCAATGTTGTGAAAGGTCCTTGGGTTGTTAAAGCAGCAGCTGG 571
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GAGGTTCAAAATCGTTAGCAATGTTGTGAAAGGTCCTTGGGTTGTTAAAGCAGCAGCTGG 464
Query 572 GAAATTTGGTGCGTTTGTTGTTGGTAAGACTGTGAAATGTAGTTATTATAGAGGAGTTGA 631
|||||||||||| ||||||| ||| ||| || |||| ||||||||| ||||||||| | |
Sbjct 465 GAAATTTGGTGCATTTGTTGCTGGGAAGGCTATGAAGTGTAGTTATCATAGAGGAGATAA 524
Query 632 TTATTTTGAGATTGATGTTGATATTAGTAGCTCGGCGATTTTGGCGGCGCTTGTGAGGTT 691
|||||||||| ||||||||||||| ||||||||||||||| || |||||||| | |||||
Sbjct 525 TTATTTTGAGGTTGATGTTGATATAAGTAGCTCGGCGATTATGACGGCGCTTATTAGGTT 584
Query 692 GATGTTGGGGTATGTTACG-AGTTTGATGGTTGATGTTTGTTTTGTTGTGGAAGCGCAAA 750
|||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||||
Sbjct 585 TATGTTGGGGTATGTTACGTA-TTTAATGGTTGATATTGGTTTTGTTGTGGAAGCGCAAA 643
Query 751 CGGAGGAGGAGTTGCCGGAGAGATTGATTGGTGGTGCTAGGATTTGTCATATGGAGTTAT 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 CGGAGGAGGAGTTGCCGGAGAGATTGATTGGTGGTGCTAGGATTTGTCATATGGAGTTAT 703
Query 811 CGTCGGCGTTTGT-AGTtgatgatgatgatgatgatgatgatgaGAA-GAAGCGACGGCG 868
||||||||||||| | || ||||||||| ||||| || || ||| | ||| ||||||
Sbjct 704 CGTCGGCGTTTGTGATTT-ATGATGATGTTGATGG-GAAGAAGAGTTCGCAGCAACGGCG 761
Query 869 GAGAATGATGGGTGTGGCGGAAGAAAA 895
|||||||||||||| |||||||| |||
Sbjct 762 GAGAATGATGGGTGCGGCGGAAGGAAA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5