BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942118 Length=1152 Score E Sequences producing significant alignments: (Bits) Value AT5G25460.1 | Symbols: | Protein of unknown function, DUF642 |... 1796 0.0 > AT5G25460.1 | Symbols: | Protein of unknown function, DUF642 | chr5:8863363-8865677 FORWARD LENGTH=1460 Length=1460 Score = 1796 bits (972), Expect = 0.0 Identities = 1093/1153 (95%), Gaps = 2/1153 (0%) Strand=Plus/Plus Query 1 TCTCTTTCTCTCTTCCGTCAAAATGGGGGGCGTCACCGTCGTGTCCTTCTTCCTTCTTTT 60 |||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||||| Sbjct 46 TCTCGTTCTCTCTTCCGTCAATATGGAAGGCGTCACCGTCGTGTCTTTCTTCCTTCTTTT 105 Query 61 CATCGCCACCGCAACCGCCGCTAAGTCCACCGTCTCGTTCCGTGACGGCATGTTACCAAA 120 |||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 106 CATCGCCACCGCCATGGCCGCCAAGTCCACCGTCTCCTTCCGTGACGGCATGTTACCAAA 165 Query 121 CGGAGACTTCGAGCTAGGACCAAAACCATCAGACATGAAAGGAACAGAAATACTAAACAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 CGGAGACTTCGAGCTAGGACCAAAACCATCAGACATGAAAGGAACAGAAATACTAAACAA 225 Query 181 ACTAGCAATACCAAACTGGGAAGTCACAGGATTCGTCGAGTACATTAAATCAGGACATAA 240 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 226 ACTAGCAATACCAAACTGGGAAGTCACAGGATTCGTCGAATACATTAAATCAGGACATAA 285 Query 241 ACAAGGAGACATGCTGCTCGTTGTTCCGGCCGGTAAATTCGCAGTCCGGCTAGGAAACGA 300 ||||||||||||||| ||||||||||| |||||||||||||| || | || || ||||| Sbjct 286 ACAAGGAGACATGCTTCTCGTTGTTCCCGCCGGTAAATTCGCTGTAAGACTTGGGAACGA 345 Query 301 AGCATCGATCAAACAAAGACTTAAAGTGGTTAAAGGAATGTATTACTCGCTCACTTTTAG 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 346 AGCATCGATCAAACAAAGACTTAAAGTGGTTAAAGGAATGTATTACTCACTCACTTTTAG 405 Query 361 TGCTGCTAGGACTTGTGCTCAAGACGAGAGACTTAACATATCTGTAGCACCTAACTCCGG 420 ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 406 TGCTGCTAGAACTTGTGCACAAGACGAGAGACTTAACATATCTGTAGCACCTGACTCCGG 465 Query 421 TGTGATTCCGGTTCAGACGGTTTATAGTAGTAGTGGGTGGGATTTGTATGCTTGGGCGTT 480 |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 466 TGTGATTCCGATTCAGACGGTTTATAGTAGTAGTGGTTGGGATTTATATGCTTGGGCGTT 525 Query 481 TCAAGCTGAGAGTGAAGTTGCTGAAGTTGTGATTCATAATCCTGGTGTTGAAGAAGATCC 540 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 526 TCAAGCTGAGAGTGATGTTGCTGAAGTTGTGATTCATAATCCTGGTGTTGAGGAAGATCC 585 Query 541 AGCTTGTGGTCCACTTATTGATGGTGTTGCTATGAGATCTCTTTACCCTCCTCGACCAAC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 586 AGCTTGTGGTCCACTTATTGATGGTGTTGCTATGAGATCTCTTTACCCTCCTAGACCAAC 645 Query 601 TAATAAGAACATTTTGAAAAACGGAGGATTTGAAGAAGGTCCATTAGTACTACCGGGCGC 660 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | Sbjct 646 TAATAAGAACATTTTGAAAAACGGAGGATTTGAAGAAGGTCCATTAGTATTACCCGGCTC 705 Query 661 GACAACGGGAGTTTTGATTCCACCGTTCATAGAAGATGACCACTCTCCTTTACCTGGCTG 720 |||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| || Sbjct 706 GACAACTGGAGTTTTGATCCCACCGTTTATAGAAGACGACCACTCTCCTTTACCTGGATG 765 Query 721 GATGGTGGAGTCTCTCAAAGCTGTCAAGTACGTAGACATTGAGCATTTCTCAGTCCCACA 780 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 766 GATGGTGGAGTCTCTCAAAGCTGTCAAGTACGTAGACGTTGAACATTTCTCAGTCCCACA 825 Query 781 GGGTCGCCGAGCTATTGAGCTTGTAGCGGGTAAAGAGAGCGCCATCGCTCAAGTGGTTCG 840 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 826 GGGTCGCAGAGCTATTGAGCTTGTAGCGGGTAAAGAGAGTGCCATCGCTCAAGTGGTTCG 885 Query 841 TACCATCATTGGGAAAACTTACGTGCTTTCTTTTGCGGTTGGAGATGCCAACAACGCTTG 900 || |||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 886 GACTGTCATTGGGAAGACTTACGTGCTGTCTTTTGCGGTTGGAGACGCCAACAATGCTTG 945 Query 901 CAAAGGATCAATGGTGGTTGAGGCTTTTGCGGGAAAAGAGACACTTAAGGTCCCTTACGA 960 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 946 CAAAGGATCAATGGTGGTTGAGGCTTTTGCAGGAAAAGATACACTTAAGGTCCCTTACGA 1005 Query 961 GTC-ACAAGGCACCGGAGGGTTTAAACGAGCTTCTATCCGGTTTGTGGCGGTTTCGAGCC 1019 ||| | ||||||| ||||||||||||||||||||||| || |||||||||||||||| || Sbjct 1006 GTCGA-AAGGCACAGGAGGGTTTAAACGAGCTTCTATTCGATTTGTGGCGGTTTCGACCC 1064 Query 1020 GATCAAGAATTATGTTCTACAGCACTTTCTATGCCATGAGAAGCGATGATTTCTCGTCAT 1079 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1065 GATCAAGAATTATGTTCTACAGCACTTTCTATGCCATGAGGAGCGATGATTTCTCGTCAT 1124 Query 1080 TGTGCGGGCCTGTGATCGACGATGTCAAGCTTATAAGCGTTCGTAAACCATAGATGAATC 1139 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1125 TGTGTGGGCCTGTGATCGATGATGTCAAGCTTATAAGCGTTCGTAAACCATAGATGAATC 1184 Query 1140 ACAAATCCTATTA 1152 || |||||||||| Sbjct 1185 ACCAATCCTATTA 1197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56525813670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5