BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942164 Length=564 Score E Sequences producing significant alignments: (Bits) Value AT5G25840.1 | Symbols: | Protein of unknown function (DUF1677)... 894 0.0 > AT5G25840.1 | Symbols: | Protein of unknown function (DUF1677) | chr5:9010724-9011498 REVERSE LENGTH=775 Length=775 Score = 894 bits (484), Expect = 0.0 Identities = 536/562 (95%), Gaps = 0/562 (0%) Strand=Plus/Plus Query 1 AAAGATCACATATCCTTCCAATGGCCCCCCTTCAACGCACAATCTCTGATATTTCACACC 60 ||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 49 AAAGACCACATATCCTTCCAATGGCCCCCCTTCAACGCACCATCTCGGATATTTCACACC 108 Query 61 AAATATCCATAGACAACACTCTAACAAAAGAACCATCTCCAACCGGAACCGCAACAACTT 120 |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 109 AAATTTCAATAGACAACACTCTAACAAAAGAACCATCTCCAACCGCAACCGCAACAACTT 168 Query 121 TGTTGTCCTTATCAACGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT 180 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 169 TGTTATCCTTATCAGCGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT 228 Query 181 CTGAAGAGTGCACGCCGGAGTACATACACCGTGTACGTTCAAAATTTTTAGGGAAGTTGA 240 |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||| Sbjct 229 CTGAAGAGTGCACGCCGGAGTACATACACCGTGTGCGTTCAAAATTCTCAGGGAAGCTGA 288 Query 241 TTTGCGGGCTGTGTGAAAAGGCAGTGGAGGAGGAGATGGAGAAGATGATCAACAGTGATG 300 ||||||||||||| ||||| || ||||||| ||||||||||||||||| ||||||||| | Sbjct 289 TTTGCGGGCTGTGCGAAAAAGCGGTGGAGGGGGAGATGGAGAAGATGAACAACAGTGAAG 348 Query 301 TGGTGGTAGAGAAGCGGCGAGAAGAGGCAGTGAAGGCACATATGAGCGCATGTTCCCGGT 360 || || | |||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 349 TGCTGATGGAGAAGCGGCGAGAAGAGGCAGTGAAGGTACACATGAGCGCATGTTCCCGGT 408 Query 361 TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC 468 Query 421 TGAAGAAGAGATCTAAGAAGATGGTTGGAGCCACCAAGCCGGAAAAAGGTGGCCTCGCTA 480 |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 469 TGAAAAAGAGGTCTAAGAAGATGGTTGGAGCCACCAAGCCTGAAAAAGGTGGCCTCGCTA 528 Query 481 GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT 588 Query 541 AGCTTATTTGTATACTCACGTA 562 |||||||||||||||||||||| Sbjct 589 AGCTTATTTGTATACTCACGTA 610 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27076205233 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5