BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942207
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26200.1 | Symbols: | Mitochondrial substrate carrier famil... 1620 0.0
> AT5G26200.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:9157142-9158404 FORWARD LENGTH=1263
Length=1263
Score = 1620 bits (877), Expect = 0.0
Identities = 1001/1060 (94%), Gaps = 11/1060 (1%)
Strand=Plus/Plus
Query 10 TTAGCTCAAAATATGAGTTTAGGTGCTTTGATGGAAGAGAAGAGAAGAGCAACAACTTCA 69
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTAGCTC-AAA-ATGAGTTTAGGTGCTTTGATGGAAGAGAAGAGAAGAGCAACAACTTCA 174
Query 70 tcttcttcttcttcttctCAGGTACATATGTCTAATGATATAGATTGGCAAATGCTTGAT 129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 175 ------TCTTCTTCTTCTCAGGTACATATGTCAAATGATATAGATTGGCAAATGCTTGAT 228
Query 130 AAATCGAGGTTTTTCTTTCTCGGTGCTGCTCTTTTCTCCGGTGTGTCCACTGCTCTTTAC 189
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 229 AAATCGAGGTTTTTCTTCCTCGGTGCTGCTCTTTTCTCCGGTGTATCCACTGCTCTTTAC 288
Query 190 CCTATTGTAGTTCTCAAAACAAGGCAACAAGTCTCTCCGACTCGTGTCTCTTGCGCCAAC 249
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 289 CCTATTGTAGTTCTCAAAACAAGGCAACAAGTCTCTCCGACTCGTGTCTCATGTGCCAAC 348
Query 250 ATTTCTCTGGCTATTGCTAGACTTGAGGGTC-TAAGAGGGTTTTACAAGGGGTTTGGAAC 308
|||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||||
Sbjct 349 ATTTCTCTGGCTATTGCTAGACTTGAAGGTCTTAA-AGGGTTTTACAAGGGTTTTGGAAC 407
Query 309 ATCTTTGCTTGGAACTATCCCGGCTCGTGCTCTCTATATGACAGCTCTAGAGATTACGAA 368
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 408 ATCTTTGCTTGGAACCATCCCGGCTCGTGCTCTCTATATGACTGCTCTAGAGATTACAAA 467
Query 369 GAGTAGTGTAGGTCAAGCAACTGTTAGTTTAGGATTGTCGGATACTACGGCTTTGGCTGT 428
||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 468 GAGTAGTGTAGGTCAAGCAACTGTTAGGTTAGGATTGTCTGATACTACGTCTTTGGCTGT 527
Query 429 TGCTAATGGTGCAGCTGGTTTGACCTCGGCCGTTGCTGCTCAGGTTGTCTGGACCCCGAT 488
|||||||||||||||||||||||||||||| || ||||| ||| ||||||||| |||||
Sbjct 528 TGCTAATGGTGCAGCTGGTTTGACCTCGGCTGTGGCTGCCCAGACTGTCTGGACTCCGAT 587
Query 489 TGATGTTGTGAGTCAACGGCTTATGGTTCAAGGCGATCTTTCCTTGAGTAAGCATATTCC 548
|||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||
Sbjct 588 TGATATTGTGAGTCAAGGGCTTATGGTTCAAGGCGATGTCTCCTTGAGTAAGCATCTTCC 647
Query 549 TGGAGTGATGAATTCTTGCAGATACAGAAATGGGTTTGATGCTTTTAGAAAGATTCTTTA 608
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGGAGTGATGAACTCTTGCAGATACAGAAATGGGTTTGATGCTTTTAGAAAGATTCTTTA 707
Query 609 CACAGATGGACCAAGAGGGTTCTACAGAGGATTCGGGATCTCGATCTTGACTTACGCGCC 668
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 708 CACAGATGGACCAAGAGGGTTCTACAGAGGATTTGGGATCTCGATCTTGACTTACGCACC 767
Query 669 TTCAAATGCCGTATGGTGGGCGTCCTATTCTTTGGCTCAAAAATCAATTTGGTCTCGATA 728
||| || || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 768 TTCCAACGCGGTTTGGTGGGCGTCTTATTCTTTGGCTCAAAAATCAATTTGGTCTCGATA 827
Query 729 CACGCACTCCTGCGACCACAATAAAGATGCTGGTGGCTCAGTGGTGGTTCAAGCGTTGAG 788
|| |||||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 828 CAAGCACTCCTACAACCACAAGGAAGATGCTGGTGGCTCAGTGGTGGTTCAAGCGTTGAG 887
Query 789 TGCAGCTACAGCAAGCGGTTGCTCGGCTTTAGTAACTATGCCAGTAGACACAATCAAGAC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TGCAGCTACAGCAAGCGGTTGCTCGGCTTTAGTAACTATGCCAGTAGACACAATCAAGAC 947
Query 849 ACGGTTGCAGGTCTTAGACACAGAAGAGAACGGGAGGAGACGAGCAATGACAGTGATGCA 908
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GCGGTTGCAAGTCTTAGACGCAGAAGAGAACGGGAGGAGACGAGCAATGACAGTGATGCA 1007
Query 909 GTCGGTGACGAGCTTGATGAAGGAAGGAGGATTTGGGGCTTGTTACAGAGGATTGGGACC 968
||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 1008 GTCAGTGAAGAGCTTGATGAAGGAAGGAGGAGTTGGTGCTTGTTACAGAGGATTAGGACC 1067
Query 969 AAGGTGGGTCTCAATGTCGATGTCCGCAACAACAATGATCACAACCTACGAGTTCTTGAA 1028
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1068 AAGATGGGTCTCAATGTCGATGTCCGCAACAACGATGATCACAACCTACGAGTTCTTGAA 1127
Query 1029 GCGCCTGGCAACAAAGAAGCAGAAATGATATAT-GATAAA 1067
|||||| |||||||||||||||||||||||||| ||||||
Sbjct 1128 GCGCCTAGCAACAAAGAAGCAGAAATGATATATTGATAAA 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5