BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942295
Length=1969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27920.1 | Symbols: | F-box family protein | chr5:9941905-9... 3133 0.0
> AT5G27920.1 | Symbols: | F-box family protein | chr5:9941905-9944778
REVERSE LENGTH=2358
Length=2358
Score = 3133 bits (1696), Expect = 0.0
Identities = 1875/1964 (95%), Gaps = 2/1964 (0%)
Strand=Plus/Plus
Query 3 TTTTTGGTTCTGTTGC--AAATGTCGATGTCTCCATCAATTTTATCCGTTTTGTCGGAAG 60
||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 252 TTTCTGGTTCTGTTGCAAAAATGTCGACGTCACCATCAATTTTATCCGTTTTGTCGGAAG 311
Query 61 ATCTTCTTGTCCGAGTCTACGAATTTCTAGATCCACCGTGTCGGAAAACATGGCGTTTAA 120
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 312 ATCTTCTTGTCCGAGTCTACGAATGTCTAGACCCACCGTGTCGGAAAACATGGCGTTTAA 371
Query 121 TCAGCAAAGACTTCCTCCGAGTCGACTCATTGAGTCGAACCACGATCCGAATCCTCCGGG 180
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 372 TCAGCAAAGACTTCCTCCGAGTCGACTCATTGACTCGTACCACGATCCGAATCCTCCGGG 431
Query 181 TTGAGTTTCTCCCGACGCTTCTCTTCAAATACCCAAATCTCTCTTCCCTCGACCTCTCCG 240
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 432 TCGAATTTCTCCCGACGCTTCTCTTCAAATACCCAAACCTCTCTTCCCTCGACCTCTCCG 491
Query 241 TCTGTCCCAAACTCGACGACGACGTCGTTTTGCGTCTAGCATTAGACGGCACCGTTTCTA 300
||||||| |||||||||||||| |||||||| ||| |||||||||||||| || |||| |
Sbjct 492 TCTGTCCAAAACTCGACGACGATGTCGTTTTACGTTTAGCATTAGACGGCGCCATTTCAA 551
Query 301 CATTAGGCATTAAGTCACTGAACCTGAGCCGATCCACCGCAGTTCGAGCCAGAGGACTTG 360
| ||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||
Sbjct 552 CGTTAGGCATTAAGTCACTGAACTTAAGCCGTTCCACCGCAGTTCGAGCTAGAGGACTTG 611
Query 361 AGACGTTGGCGCGTATGTGTCACGCTTTAGAGCGCGTTGATGTGTCTCATTGCTGGGGAT 420
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 612 AGACGTTGGCGCGTATGTGTCACGCTTTAGAGCGCGTCGACGTGTCTCATTGCTGGGGAT 671
Query 421 TCGGTGATAGAGAAGCGGCGGCGCTGTCGTCTGCGGCGGGGCTGAGAGAGCTGAAGATGG 480
|||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 672 TCGGCGATAGAGAAGCGGCTGCGTTGTCGTCTGCGACGGGGCTGAGAGAGCTGAAGATGG 731
Query 481 ATAAGTGTTTGAGCTTAAGCGATGTTGGATTAGCGAGGATCGTTGTTGGATGTAGTAATC 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 732 ATAAGTGTTTGAGCTTAAGCGATGTTGGATTAGCGAGGATTGTTGTTGGATGTAGTAATC 791
Query 541 TGAATAAGATTAGCTTGAAATGGTGTATGGAGATCTCTGATCTTGGGATTGATCTTCTCT 600
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 792 TGAATAAGATTAGCTTGAAATGGTGTATGGAGATCTCTGATCTTGGTATTGATCTTCTTT 851
Query 601 GTAAGATTTGCAAAGGATTGAAATCTCTAGATGTCTCGTATCTTAAGATCACCAATGATT 660
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 852 GTAAGATTTGCAAAGGATTGAAATCTCTAGATGTCTCTTATCTTAAGATCACAAATGATT 911
Query 661 CGATCCGGTCTATAGCTTTGCTGCTAAAGCTTGAGGTTTTAGATATGGTAAGTTGTCCTT 720
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 912 CGATCCGGTCTATAGCGTTGCTGGTAAAGCTTGAGGTTTTAGATATGGTAAGTTGTCCTT 971
Query 721 TGATAGATGATGCTGGATTACAGTTTCTAGAGAATGGTTCTCCTTCACTACAGAAGATCG 780
|||||||||||| ||| |||||||||||||||||||||||||||||| ||||| || | |
Sbjct 972 TGATAGATGATGGTGGGTTACAGTTTCTAGAGAATGGTTCTCCTTCATTACAGGAGGTTG 1031
Query 781 ATGTCACGAGGTGTGAGCGTGTGAGTTTGTCCGGCTTGATCTCTATAGTCAGAGGCCATC 840
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1032 ATGTCACTAGGTGTGACCGTGTGAGTTTGTCTGGCTTGATCTCTATAGTCAGAGGCCATC 1091
Query 841 CTGATATTCAACTTCTAAAAGCCAGTCACTGTGTATCCGAAGTCTCTGGTAGCTTCTTAC 900
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1092 CTGATATTCAACTTCTTAAAGCCAGTCACTGTGTATCGGAAGTCTCTGGTAGCTTCTTAA 1151
Query 901 AGTACATCAAAGCTTTGAAGCATCTCAAGACTATATGGATTGATGGAGCTCATGTTTCTG 960
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AGTACATCAAAGGTTTGAAGCATCTCAAGACTATATGGATTGATGGAGCTCATGTTTCTG 1211
Query 961 ATTCCTCTCTTGTAACCTTAAGCTCTAGCTGTAGATCTTTAGTGGAGATTGGATTGAGCA 1020
||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1212 ATTCCTCTCTTGTAAGTTTAAGCTCTAGCTGTAGATCTTTAATGGAGATTGGACTGAGCA 1271
Query 1021 GATGTGTTGATGTGACGGATATTGGGATGATGGGTCTTGCACGCAACTGCTTAAACCTGA 1080
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1272 GATGTGTTGATGTGACGGATATTGGGATGATAAGTCTTGCACGCAACTGCTTAAACCTGA 1331
Query 1081 AAACATTGAATCTGGCGTGTTGTGGATTCGTGACGGATGTAGCCATCTCTGCTGTAGCTC 1140
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1332 AAACATTAAATCTGGCGTGTTGCGGATTCGTGACGGATGTAGCCATCTCTGCTGTAGCTC 1391
Query 1141 AGTCTTGCCGAAATCTAGAGACTTTGAAGCTAGAGTCTTGTCATTTGATAACTGAGAAAG 1200
|||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1392 AGTCTTGCCGGAATCTAGGGACTTTAAAGTTAGAGTCTTGTCATTTGATAACTGAGAAAG 1451
Query 1201 GTCTTCAATCGCTCGGATGTTACTCCAAGCTTCTTCAAGAACTCGATCTTACTGACTGTT 1260
||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 1452 GTCTTCAATCGCTTGGATGTTACTCCATGCTTGTTCAAGAACTTGATCTTACTGACTGTT 1511
Query 1261 ATGGCGTAAATGACAGAGGGCTAGAATATATCTCAAAGTGTTCGAATCTTCAAAGATTGA 1320
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1512 ATGGTGTAAATGACAGAGGGCTAGAATATATCTCGAAGTGTTCGAATCTTCAAAGATTGA 1571
Query 1321 AACTTGGCCTCTGCACAAATATCTCAGACAAAGGGATTTTTCATATTGGTTCCAAATGTT 1380
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1572 AACTTGGACTCTGCACAAATATCTCAGACAAAGGGATTTTCCATATTGGTTCCAAATGTT 1631
Query 1381 CGAAGCTTCTAGAACTTGATCTATACCGTTGTGCCGGTTTTGGAGATGATGGTTTAGCAG 1440
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1632 CGAAGCTTCTAGAACTTGATCTATACCGCTGTGCCGGTTTTGGAGATGATGGTTTAGCAG 1691
Query 1441 CTCTATCCCGAGGTTGCAAGAGCTTGAACCGACTCATTCTATCATACTGCTGTGAACTAA 1500
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 CTTTATCTCGAGGTTGCAAGAGCTTGAACCGACTCATTCTATCATACTGCTGTGAACTAA 1751
Query 1501 CTGACACCGGGGTTGAACAAATCCGCCAGCTAGATCTTCTGAGTCACCTTGAACTTCGAG 1560
||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||
Sbjct 1752 CTGACACCGGGGTTGAACAAATCCGGCAGCTAGAACTTCTAAGTCACCTCGAACTTCGAG 1811
Query 1561 GGCTAAAGAATATAACCGGTGTTGGTTTAGCTGCAATTGCGTGCGGCTGCAAGAAATTGG 1620
||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 1812 GGCTAAAGAATATAACCGGTGTTGGTTTAGCAGCCATTGCGTCCGGCTGCAAGAAATTGG 1871
Query 1621 GTTACTTGGACCTGAAACTCTGCGAGAATATTGATGATTCGGGTTTCTGGGCGCTCGCTT 1680
||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1872 GTTACTTGGACGTTAAACTCTGCGAGAATATTGATGATTCGGGTTTTTGGGCGCTCGCTT 1931
Query 1681 ACTTCTCAAAAAACCTACGACAGATAAACTTGTGCAATTGCTCGGTGTCTGATACGGCTC 1740
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1932 ACTTCTCGAAAAACCTACGACAGATAAACTTGTGCAATTGCTCGGTGTCTGATACGGCTC 1991
Query 1741 TATGCATGTTGATGAGCAATCTGAGTCGGGTTCAAGATGTTGACTTAGTTCATCTGAGCC 1800
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1992 TATGCATGTTGATGAGCAATCTGAGTCGGGTTCAAGACGTTGACTTAGTTCATCTGAGCC 2051
Query 1801 GTGTGACTGTAGAAGGGTTTGAGTTTGCTCTAAGAGCCTGTTGCAATAGGCTCAAGAAGC 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2052 GTGTGACTGTAGAAGGGTTTGAGTTTGCTCTAAGAGCCTGTTGCAATAGGCTCAAGAAGC 2111
Query 1861 TTAAACTTCTCGCACCTCTCCGATTCTTGCTCTCATCGGAATTGCTCGAGACACTTCATG 1920
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 2112 TTAAACTTCTCGCACCTCTCAGATTCTTGCTCTCATCGGAATTGCTCGAGACGCTTCATG 2171
Query 1921 CTCGTGGTTGCCGCATTAGATGGGACTGAAGACATAAATAACAA 1964
|||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 2172 CTCGTGGTTGCCGCATTAGATGGGACTGAAAACATAAAGAACAA 2215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97539658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5