BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942308 Length=387 Score E Sequences producing significant alignments: (Bits) Value AT5G27820.1 | Symbols: | Ribosomal L18p/L5e family protein | c... 566 7e-161 > AT5G27820.1 | Symbols: | Ribosomal L18p/L5e family protein | chr5:9859854-9861129 FORWARD LENGTH=648 Length=648 Score = 566 bits (306), Expect = 7e-161 Identities = 348/369 (94%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 19 TCAGATGGTGATTCCACCGGCAGTGAGACCACCACGTCTCTTCGACTACCTCAAACCTTA 78 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 99 TCAGATGGTGATTCCACCAGCAGTGAGACCACCACGTCTCTTCGACTACCTAAAACCTTA 158 Query 79 CGTGCTGAAAATGCATTTCACTAACAAGTTTGTTCACGCACAAGTCATCCACTCACCAAC 138 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 159 CGTGCTGAAAATGCATTTCACAAACAAGTTTGTCCACGCACAAGTCATCCACTCACCAAC 218 Query 139 AGCTACAGTTGCTTGCTCAGCGAGCTCACAGGAGAAAGCATTGAGGGAAACCATGGACAT 198 ||| ||||| ||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct 219 AGCCACAGTGGCTTGCTCAGCGAGCTCGCAAGAGAAAGCATTGAGAGAAACAATGGACAT 278 Query 199 CACGCGCGACGTTGCCGCTGCTGCAAAGATTGGTAAAATTCTCGGAGAAAGACTCTTGAT 258 ||| |||||||| || |||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 279 CACACGCGACGTCGCTGCTGCTTCAAAGATTGGTAAAATTCTTGGAGAAAGACTCTTGAT 338 Query 259 GAAAGATATTCCCGCTGTTACTATTCAGATGAAGAGAGAACAGAGGTATCATGGTAAAGT 318 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 339 GAAAGATATTCCCGCTGTTACTATTCAGATGAAGAAAGAACAGAGGTATCATGGTAAAGT 398 Query 319 CAAGGCTGTTATCGATTCTGTAAGAGAAGCTGGCGTGAAGTTGCTTTGAAGATTATTCAA 378 ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| Sbjct 399 CAAGGCTGTTATCGATTCTGTAAGAGAAGCTGGTGTCAAGTTGCTCTGAAGATTATTCAA 458 Query 379 TCATCCGAA 387 | ||| ||| Sbjct 459 TAATCTGAA 467 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18247192887 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5