BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942308

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein | c...   566    7e-161


> AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein | 
chr5:9859854-9861129 FORWARD LENGTH=648
Length=648

 Score =  566 bits (306),  Expect = 7e-161
 Identities = 348/369 (94%), Gaps = 0/369 (0%)
 Strand=Plus/Plus

Query  19   TCAGATGGTGATTCCACCGGCAGTGAGACCACCACGTCTCTTCGACTACCTCAAACCTTA  78
            |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct  99   TCAGATGGTGATTCCACCAGCAGTGAGACCACCACGTCTCTTCGACTACCTAAAACCTTA  158

Query  79   CGTGCTGAAAATGCATTTCACTAACAAGTTTGTTCACGCACAAGTCATCCACTCACCAAC  138
            ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  159  CGTGCTGAAAATGCATTTCACAAACAAGTTTGTCCACGCACAAGTCATCCACTCACCAAC  218

Query  139  AGCTACAGTTGCTTGCTCAGCGAGCTCACAGGAGAAAGCATTGAGGGAAACCATGGACAT  198
            ||| ||||| ||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct  219  AGCCACAGTGGCTTGCTCAGCGAGCTCGCAAGAGAAAGCATTGAGAGAAACAATGGACAT  278

Query  199  CACGCGCGACGTTGCCGCTGCTGCAAAGATTGGTAAAATTCTCGGAGAAAGACTCTTGAT  258
            ||| |||||||| || |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct  279  CACACGCGACGTCGCTGCTGCTTCAAAGATTGGTAAAATTCTTGGAGAAAGACTCTTGAT  338

Query  259  GAAAGATATTCCCGCTGTTACTATTCAGATGAAGAGAGAACAGAGGTATCATGGTAAAGT  318
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  339  GAAAGATATTCCCGCTGTTACTATTCAGATGAAGAAAGAACAGAGGTATCATGGTAAAGT  398

Query  319  CAAGGCTGTTATCGATTCTGTAAGAGAAGCTGGCGTGAAGTTGCTTTGAAGATTATTCAA  378
            ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct  399  CAAGGCTGTTATCGATTCTGTAAGAGAAGCTGGTGTCAAGTTGCTCTGAAGATTATTCAA  458

Query  379  TCATCCGAA  387
            | ||| |||
Sbjct  459  TAATCTGAA  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5