BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942385 Length=832 Score E Sequences producing significant alignments: (Bits) Value AT1G24310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1192 0.0 > AT1G24310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). | chr1:8624061-8626405 FORWARD LENGTH=1491 Length=1491 Score = 1192 bits (645), Expect = 0.0 Identities = 743/788 (94%), Gaps = 15/788 (2%) Strand=Plus/Plus Query 1 TCTAACCTCTCCTTTTCCCAATGTTCGGCACTCCGTCATCCTCGCCGTCATTCGGCACTC 60 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 112 TCTAACCTCTCCTTTTCCCAATGTTCGGCACTCCGTCTTCATCGCCGTCATTCGGCACTC 171 Query 61 CGTCGTCCACACCCGCCTTTGGTACGTCTTCACCGGCGTTCGGTACACCATCAGCCACGC 120 |||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||| |||| Sbjct 172 CGTCATCCACACCCGCCTTTGGCACATCTTCTCCGGCGTTCGGTACACCGTCAGCTACGC 231 Query 121 CTGCGTTCGGTACGCCGTCGGTTCCTTCCTTCTCCTCCGGCGGATTTGGCTCCTCACTCT 180 |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| Sbjct 232 CTGCGTTCGGTACGCCATCGAATCCTTCCTTCTCCTCCGGCGGATTTGGCTCTTCACTCT 291 Query 181 TCTCGACTCCCTTCTCATCGCAACAGCCACAG------CAACAACAGC-A-A-CAGCAGC 231 ||||| ||||||||||||| |||||||||||| |||||||| | | | ||||||| Sbjct 292 TCTCGTCTCCCTTCTCATCTCAACAGCCACAGCAACAACAACAACAACAACAGCAGCAGC 351 Query 232 AGCCGAGTTCACTGTTTCAGCAACAGCCATCTTCTAGTTTTGGTTTTCAGTCACCATTCA 291 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 352 AGCCGAGTTCACTGTTTCAGCAACAGCCATCTTCTAATTTTGGTTTTCAGTCACCATTCA 411 Query 292 ACAACACCGCT------CAGCAGCAAACGCCGTTCCCAAATGCTCAATTGACTACTCAGA 345 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 412 ACAACACCGCTCAGCAGCAGCAGCAAACGCCTTTCCCAAATGCTCAATTGACTACTCAGA 471 Query 346 TGGCTCCCGTTGCTCCAATTCCTTACTCTCTCGCCGATCGTGACGTCCAGGCCATCATTG 405 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 472 TGGCTCCCGTTGCTCCAATTCCTTACTCTCTCGCCGATCGTGATGTCCAGGCTATCATTG 531 Query 406 AAGCTTATAAGGAAGATCCGACGAATCCCAAGTATGCTTTTCAGCATCTTTTGTTTAGTG 465 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct 532 AAGCTTATAAGGAAGATCCAACGAATCCCAAGTATGCTTTTCAGCATCTTTTATTCAGTG 591 Query 466 TGACTGAACCACAGTACCGGGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGG 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 TGACTGAACCACAGTACCGGGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGG 651 Query 526 CTATGAGCAAACTTGAAGGCATGGATTCAACAGAAAGAGAGCGCCTGTGGCCTCAGCTTG 585 | ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 652 CCATGAGCAAACTTGAAGGTATGGATTCAACAGAAAGAGAGCGCCTTTGGCCTCAGCTTG 711 Query 586 TGCAAGGTTTTAAAGATCTTTCTCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGCCTCAG 645 |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 712 TGCAAGGTTTCAAAGATCTCTCTCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGTCTCAG 771 Query 646 ATAGGGATAGAATAAAAACGACTCAGAGCAATGTTAAAATGCTCCAGAGACATTTGCAAG 705 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 772 ATAGGGATAGAATAAAAACGACTCAGAGCAATGTTAAAATGCTTCAGAGACATTTGCAAG 831 Query 706 CATCAACCTTTCCATCTATTGAAAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCA 765 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 CATCAACCTTCCCATCTATTGAAAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCA 891 Query 766 TGTTGAGG 773 |||||||| Sbjct 892 TGTTGAGG 899 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40538956629 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5