BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942565
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758363... 1727 0.0
> AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758363-5760558
FORWARD LENGTH=1537
Length=1537
Score = 1727 bits (935), Expect = 0.0
Identities = 1045/1099 (95%), Gaps = 4/1099 (0%)
Strand=Plus/Plus
Query 14 TTTG-TAGATGGAAGAAGATTGCGAGTTTCGACATTGGGATGAGTTAATTCCAGACGCTC 72
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 126 TTTGTTAGATGGAAGAAGATTGCGAGTTTCGACATTGGGATGAGTTGATTCCAGATGCTC 185
Query 73 TTGGTTTAATCTTTAGTCATTTAGCTCTTCAAGAGGTACTAACAGTGGTGCCTAGAGTTT 132
|||||||||||||||| || ||| |||||||||| |||||||||||||||||||||||||
Sbjct 186 TTGGTTTAATCTTTAGCCACTTACCTCTTCAAGAAGTACTAACAGTGGTGCCTAGAGTTT 245
Query 133 GCAAAGCATGGAACAGAGCTGTTACTGGACCTTATTGTTGGCAAGAGATTGACATTGAGC 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GCAAAGCATGGAACAGAGCTGTTACTGGACCTTATTGTTGGCAAGAGATTGACATTGAGC 305
Query 193 TGTGGAGTAACCGTTGTCATCAGTCTGATCATCTTGACCGGATGCTTGAAATGTTGATCC 252
||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 306 TGTGGAGTAACCGTTTTCACCAGTCTGATCATCTTGACCGGATGCTTGAGATGTTGATCC 365
Query 253 CTAGGAGCTCTGGTTCGTTGCGAAAACTCTCCGTTACTGGCCTTCGAAATGACTCTATCT 312
|||| ||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTAGAAGCGCTGGCTCTTTGCGAAAACTCTCCGTTACTGGCCTTCGAAATGACTCTATCT 425
Query 313 TCTCCTTCATTGCACAACATGCTGGTTCACTTAAAACCTTGAAGGTGCCAAGAAGTGGTC 372
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 426 TCTCCTTCATTGCACAACATGCTGGTTCACTTAAGACCTTGAAGGTGCCAAGAAGTGGTC 485
Query 373 TGACTAATTCGGGTGTGGTAAACGTAGCTGAAAAGCTTTCGTCTCTCACTTTCTTGGACT 432
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 486 TGACTAATTCGGGTGTGGTAAACGTAGCTGAAAAGCTCTCGTCTCTCACTTTCTTGGATT 545
Query 433 TGAGCTACTGCTGCAAAGTAGGTCCAGAGGCGATACAAGCCATAGGAAACCATTGTAAAT 492
||||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||
Sbjct 546 TGAGCTACTGCTGCAAAATAGGCCCAGAGGCGATACAAGCCATAGGAAAACACTGTAAAT 605
Query 493 CCCTGAGAGAGTTTTGCAGAAACATGCATCCATTGGATGTAGCAAGTGTTGTCTCTCACG 552
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CACTGAGAGAGTTTTGCAGAAACATGCATCCATTGGATGTAGCAAGTGTTGTCTCTCACG 665
Query 553 ACGATGAAGCTTATGCAATTGCCAACACAATGCCAAAGCTGAAGCGGTTAGAAATTGCAT 612
|||||||||||||||| || ||||| |||||||| ||||||||||||||||| || || |
Sbjct 666 ACGATGAAGCTTATGCTATCGCCAATACAATGCCGAAGCTGAAGCGGTTAGAGATAGCTT 725
Query 613 ATCACCGAGTCAGCACAGAAGGAGTACTCAAAATCTTATCGTGCTGCGTTTTTCTTGAGT 672
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 726 ACCACCGAGTCAGCACAGAAGGAGTACTCAAGATCTTATCGTGCTGTGTTTTTCTTGAGT 785
Query 673 TCTTGGAACTTAGAGGCTGTTGGGACGTGCAACTCGATAACAAGTTCTTCAAAGAAAAGT 732
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 786 TCTTGGAACTTAGAGGCTGTTGGGACGTGCAACTTGATAACAAGTTTTTCAAAGAGAAGT 845
Query 733 TTCCTGATATGAAAGTGTTAGGTCCACGCGTGATCGGATTCTATGATATGATAAACGATT 792
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 846 TTCCGGATATGAAAGTGTTAGGTCCACGCGTGATCGGATTCTATGATATGATAAATGATT 905
Query 793 GGGAGGATTGCTGCTCAGATTATTTCTCAGATGGGTCTGATTACCTGGCCTGGGAGTTTT 852
|||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct 906 GGGAGGATTGCTGCTCAGATTACTTCTCAGATGGGTCTGATTACTTGGCTTGGGAGTTTT 965
Query 853 TTGAAGATGGTGTAATGGGAGAGTTCTATGAAGATGAGTTTGAGCATGGTTGGGATGATA 912
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 966 TTGAAGATGGTGTAATGGGAGAGTTCTATGAGGATGAGTTTGAGCATGGTTGGGACGATA 1025
Query 913 ATTTTTATGCGGACAACGCAATTTTAGACATGGAACCGCATGTTTGGCCGCCATCTCCAT 972
||||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct 1026 ATTTTTATGCGGAAAACGCAGTTTTAGACATGGAACCGCATATTTGGCCACCATCTCCAT 1085
Query 973 GAACCAGGTCTTGTTATGTTCGAAGTCTCTACCTAAA-GTTGCTACTAGGAATGGTTTTA 1031
|||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1086 GAACCAGGCCTTGTTATGTTCGAAGTCTCTACCTAAAAGTTGCAACTAGGAATGGTTTTA 1145
Query 1032 GCCTCT-T-ATGTGTCTTGATCTATGTATGGTGCTTGAACTTGTGTGGCTTCTTTGTGTT 1089
|||||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GCCTCTCTTAAGTGTCTTAATCTATGTATGGTGCTTGAACTTGTGTGGCTTCTTTGTGTT 1205
Query 1090 ATTCTAATATAAAAGGCTT 1108
|||||||| ||||||||||
Sbjct 1206 ATTCTAATCTAAAAGGCTT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5