BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942571

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08930.1 | Symbols: ATAPRL6, APRL6 | APR-like 6 | chr4:57291...  1266    0.0   
  AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:12748...   411    8e-114


> AT4G08930.1 | Symbols: ATAPRL6, APRL6 | APR-like 6 | chr4:5729192-5730850 
FORWARD LENGTH=1333
Length=1333

 Score = 1266 bits (685),  Expect = 0.0
 Identities = 862/946 (91%), Gaps = 17/946 (2%)
 Strand=Plus/Plus

Query  1     GTTTTGTTTAAGAAAATTTCTTCTACAATGGAGAAGAAGCCGATTttgttgttgttgttg  60
             ||||||| || |||| |||||||| | ||||||||||||| || |||||||||||||  |
Sbjct  293   GTTTTGTCTAGGAAATTTTCTTCTTCGATGGAGAAGAAGCTGACTTTGTTGTTGTTG--G  350

Query  61    ttgATGGTGATTATGTTCATAAATCTAACAAACGCCACCGTTAGGGTTCAGATTTGTCCT  120
             ||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  351   TTG-TGGTGGTTTTGTTCGTAAATCTAACAAACGCCACCGTTAGGGTTCAGATTTGTCCT  409

Query  121   AAAGGATCTGCAAAAGATTATATCTTAGGGTTTCAAGATAAATCAGCCTTGCATCGTCCT  180
             | || ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct  410   AGAGAATCTGCAAAAGATTATATCTTAGGGTTTCGAGATAAGTCAGCCTTGCATCGTCCT  469

Query  181   GCTTTTGTCACCGAGGGAGATGATCAGTGGTTACAAATGGCTTCTGATATGATTGAT---  237
             | ||||||||| ||||||||||||| |||| ||||||||||| | |||||| |||||   
Sbjct  470   GGTTTTGTCACTGAGGGAGATGATCGGTGGCTACAAATGGCTGCAGATATGGTTGATAAG  529

Query  238   AAGAACAAGTGTGACTATGTGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGA  297
             ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  530   AAGAATAAGTGTGACTATGCGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGA  589

Query  298   TTACTTAGACCAAGCTTTGATCTTATGTCTTTGTTATATTCATCGGTTCCTCACTTTGCA  357
             ||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  590   TTAGTTAGACCAAGTTTTGATCTTATGTCTCTGTTATATTCATCGGTTCCACACTTTGCA  649

Query  358   ATTGAGGAATCATCAGTTAAAGCTAGTACCTTGTCCAAGTATGGAGTTCATGGGTTTCCT  417
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  650   ATTGAGGAATCATCAGTTAAAGCTAGTACCTTGTCCAAGTATGGAGTTCATGGGTTTCCT  709

Query  418   ACTATCATCCTTATGAATTCAACAATGGGCGTAGTTTACCGGGGATCCAGAACTCTAGAT  477
             |||||||||||||||||||| ||||||  |||||||||||||||||| |||||||| |||
Sbjct  710   ACTATCATCCTTATGAATTCGACAATGCTCGTAGTTTACCGGGGATCGAGAACTCTTGAT  769

Query  478   TCTCTTGTTGCCTTCTACAGTGATGTTACTGGAATTGAAAAGCTGGATGAAACTTGGGTT  537
             || |||||||||||||||| ||||||||| |||||||||| | |||||||||  ||||||
Sbjct  770   TCCCTTGTTGCCTTCTACACTGATGTTACGGGAATTGAAACGATGGATGAAAGATGGGTT  829

Query  538   GAGAAGAA-CAGGTTAGTTCATCATTTCCACAC-GAAGCCAGAGAATTGCCCCTTCCCAT  595
             |||| ||| ||| ||||||| |||||||||| | || |||||| |||||||| |||||||
Sbjct  830   GAGA-GAAACAGATTAGTTCCTCATTTCCACGCAGA-GCCAGAAAATTGCCCGTTCCCAT  887

Query  596   GGGCAACAAGATCACCGGAGAATCTGCTTCGCCAAGAGACTTACCTGACTCTTGCCACGG  655
             |||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  888   GGGCAAGAAGATCACCCGAGAATCTGCTTCGCCAAGAGACTTATCTGACGCTTGCCACGG  947

Query  656   TTTTCGTCTTGTTGAGATTGCTACAGTTGATTTCCCCCACAATGGTTGTGTTAGCGAAAT  715
             | ||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||
Sbjct  948   TGTTCGTCTTGTTGAGATTACTACACTTGATTTCCCCCACAATGGTTGTGTTCGTGAAAT  1007

Query  716   CCACTTGGGGACGGGTTGCTCATAACATGAGACCGGGGAACCTTCT-GGAGCATACCCTT  774
              ||||||||||||||| | ||| ||||||||||  |||||||  || ||| |||||  | 
Sbjct  1008  TCACTTGGGGACGGGT-G-TCA-AACATGAGACTAGGGAACCC-CTTGGAACATACTGT-  1062

Query  775   G-CCATGTATCTCAAAGAACCTTGCATGAGTAGCAATTTGCAAGAAGGAGCCATGAATGC  833
             | |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1063  GACCATGTATCTTAAAGAACCTTGCATGAGTAGCAATTTGCAGGAAGGAGCCATGAATGC  1122

Query  834   TAGAGCATGGGCTTCCAAGTCTTTGGCCACTGTCTCAATTGGGGAATCAAGCTCATCAAG  893
             ||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||
Sbjct  1123  TAGAGCATGGGCTTCCAAGTCTTTGGCTACTGTCTCAATTGCAGAATCAAGCTCATCAAG  1182

Query  894   CAGAAGTGTTTCAGCTTCACAGTGACTTTATATTTTAACCTTCTTG  939
             |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  1183  CAGAAGTGTTTCAGCTTCACAGTGACTTCATATTTTAACCATCTTG  1228


> AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:12748571-12750383 
REVERSE LENGTH=1456
Length=1456

 Score =  411 bits (222),  Expect = 8e-114
 Identities = 607/783 (78%), Gaps = 65/783 (8%)
 Strand=Plus/Plus

Query  186   TGTCACCGAGGGAGATGATCAG-TGGTTACAAATGGC-TTCTGATATGATTGATAAGAAC  243
             |||||||||||| ||||| | | ||||| ||||| || ||  ||||||||| ||||||||
Sbjct  439   TGTCACCGAGGGTGATGAGC-GTTGGTTGCAAATAGCATT-GGATATGATTCATAAGAAC  496

Query  244   AAGTGTGACTATGTGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGATTACTT  303
             |||||||| ||||||||||| || |||||||||||||||||||| ||||| || | | ||
Sbjct  497   AAGTGTGATTATGTGGCTTTGCTTTTCTATGCATCATGGTGTCCATTCTCAAGGTCATTT  556

Query  304   AGACCAAGCTTT-GATCTTATGTCTTTGT-TATATTCATCGGTTCCTCACTTTGCAATTG  361
             ||||| || ||| ||| |||| || || | | ||||| ||  ||||||| ||||| ||| 
Sbjct  557   AGACCGAG-TTTCGATGTTATCTC-TTCTCTCTATTCCTCCATTCCTCATTTTGCCATTA  614

Query  362   AGGAATCAT-CAGTTAAAG-CTAGTA-CCTTGTCCAAGTATGGAGTTCATGGGTTTCCTA  418
             ||||||||| || || ||| |||| | |||| |||||||||||||||||||||||||| |
Sbjct  615   AGGAATCATCCA-TT-AAGCCTAGCACCCTT-TCCAAGTATGGAGTTCATGGGTTTCCCA  671

Query  419   CTATCATCCTTATGAATTCAACAATG-GGCGTA-GTTTACCGGGGATCCAGAACT-CTAG  475
             || || | ||| ||||||| |||||| || | | |  ||||| ||| || ||| | || |
Sbjct  672   CTCTCTTACTTTTGAATTCGACAATGCGG-GCACG-ATACCGAGGAACCCGAA-TGCTTG  728

Query  476   ATTCTCTTGTTGCCTTCTACAGTGATGTTACTGGAATTGA-AAAGCTGGATGAAACTTGG  534
             ||||||||||||| ||||||||||||||||| || ||||| | |  ||||| ||||||  
Sbjct  729   ATTCTCTTGTTGCTTTCTACAGTGATGTTACCGGCATTGAGACA-TTGGATAAAACTTCT  787

Query  535   GTTGAGAAGAACAG-GT-T-AGTTCATCAT-T---T--C-----C-ACACGA-AGCCAGA  578
              | ||| || | || || | ||||| |||| |   |  |     | |||| | |||||||
Sbjct  788   CTCGAG-AG-A-AGCGTATCAGTTCCTCATCTCGGTAACGAAAACAACAC-AGAGCCAGA  843

Query  579   GAATTGCCCCTTCCCATGGGCAACAAGATCACCGGAGAATCTGCTTCGCCAAGAGACTTA  638
              || || || ||| | ||||   ||||||| || |||||| ||||||| |||||||| ||
Sbjct  844   AAACTGTCCATTCACGTGGG---CAAGATCGCCTGAGAATATGCTTCGACAAGAGACCTA  900

Query  639   CCTGA-CTCTTGCCACGGTTTTCGTCTTGTTGAGATTGCTACAGTTGATTTCCCCCACAA  697
              || | |||||||||  || |||||| ||||||||||||| || ||||| |  || ||| 
Sbjct  901   TCT-AGCTCTTGCCATTGTATTCGTCCTGTTGAGATTGCTTCACTTGATATATCCTACAC  959

Query  698   TGGTTGTG-TTAGCGAAATCCACTTGGGGACGGGTTGCTCATAACATGAGACCGGGGAA-  755
             | || ||| |||  ||| | ||||||| ||||| ||||||| ||||||||| |  | || 
Sbjct  960   TCGTCGTGTTTA-TGAAGTTCACTTGGAGACGGATTGCTCAGAACATGAGA-CTAGAAAG  1017

Query  756   CCTTCTGGAGCATACC--C---TTGCCATG--TA--TCT-CAAAGAACCTTGCAT-G-AG  803
             ||| || || ||||||  |   || | | |   |  | | |||  |  | ||||| | ||
Sbjct  1018  CCTGCTAGAACATACCGTCGGGTTTCTAAGCCGAGCTGTACAATTATGCATGCATAGAAG  1077

Query  804   TAGCAATTTGCAAGAAGGAGCCATGAATGCTAGAGCATGGGCTTCCAAGTCTTTGGCCAC  863
              |||||| |||| | ||| || ||||| |||||||||||||| || ||||||||||||||
Sbjct  1078  AAGCAATCTGCAGGGAGGGGCTATGAACGCTAGAGCATGGGCCTCTAAGTCTTTGGCCAC  1137

Query  864   TGTCTCAATTGGGGAATCAAGCTCATCAAGCAGAAGT-GTTTCAGCTTCACAGTGACTTT  922
             ||||||||||||||| ||||||||||||| ||||||  ||| || |||| ||||||||| 
Sbjct  1138  TGTCTCAATTGGGGATTCAAGCTCATCAAACAGAAGAAGTT-CATCTTCTCAGTGACTTC  1196

Query  923   ATA  925
             |||
Sbjct  1197  ATA  1199



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45914010358


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5