BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942571 Length=939 Score E Sequences producing significant alignments: (Bits) Value AT4G08930.1 | Symbols: ATAPRL6, APRL6 | APR-like 6 | chr4:57291... 1266 0.0 AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:12748... 411 8e-114 > AT4G08930.1 | Symbols: ATAPRL6, APRL6 | APR-like 6 | chr4:5729192-5730850 FORWARD LENGTH=1333 Length=1333 Score = 1266 bits (685), Expect = 0.0 Identities = 862/946 (91%), Gaps = 17/946 (2%) Strand=Plus/Plus Query 1 GTTTTGTTTAAGAAAATTTCTTCTACAATGGAGAAGAAGCCGATTttgttgttgttgttg 60 ||||||| || |||| |||||||| | ||||||||||||| || ||||||||||||| | Sbjct 293 GTTTTGTCTAGGAAATTTTCTTCTTCGATGGAGAAGAAGCTGACTTTGTTGTTGTTG--G 350 Query 61 ttgATGGTGATTATGTTCATAAATCTAACAAACGCCACCGTTAGGGTTCAGATTTGTCCT 120 ||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 351 TTG-TGGTGGTTTTGTTCGTAAATCTAACAAACGCCACCGTTAGGGTTCAGATTTGTCCT 409 Query 121 AAAGGATCTGCAAAAGATTATATCTTAGGGTTTCAAGATAAATCAGCCTTGCATCGTCCT 180 | || ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 410 AGAGAATCTGCAAAAGATTATATCTTAGGGTTTCGAGATAAGTCAGCCTTGCATCGTCCT 469 Query 181 GCTTTTGTCACCGAGGGAGATGATCAGTGGTTACAAATGGCTTCTGATATGATTGAT--- 237 | ||||||||| ||||||||||||| |||| ||||||||||| | |||||| ||||| Sbjct 470 GGTTTTGTCACTGAGGGAGATGATCGGTGGCTACAAATGGCTGCAGATATGGTTGATAAG 529 Query 238 AAGAACAAGTGTGACTATGTGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGA 297 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 530 AAGAATAAGTGTGACTATGCGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGA 589 Query 298 TTACTTAGACCAAGCTTTGATCTTATGTCTTTGTTATATTCATCGGTTCCTCACTTTGCA 357 ||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 590 TTAGTTAGACCAAGTTTTGATCTTATGTCTCTGTTATATTCATCGGTTCCACACTTTGCA 649 Query 358 ATTGAGGAATCATCAGTTAAAGCTAGTACCTTGTCCAAGTATGGAGTTCATGGGTTTCCT 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 ATTGAGGAATCATCAGTTAAAGCTAGTACCTTGTCCAAGTATGGAGTTCATGGGTTTCCT 709 Query 418 ACTATCATCCTTATGAATTCAACAATGGGCGTAGTTTACCGGGGATCCAGAACTCTAGAT 477 |||||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||| Sbjct 710 ACTATCATCCTTATGAATTCGACAATGCTCGTAGTTTACCGGGGATCGAGAACTCTTGAT 769 Query 478 TCTCTTGTTGCCTTCTACAGTGATGTTACTGGAATTGAAAAGCTGGATGAAACTTGGGTT 537 || |||||||||||||||| ||||||||| |||||||||| | ||||||||| |||||| Sbjct 770 TCCCTTGTTGCCTTCTACACTGATGTTACGGGAATTGAAACGATGGATGAAAGATGGGTT 829 Query 538 GAGAAGAA-CAGGTTAGTTCATCATTTCCACAC-GAAGCCAGAGAATTGCCCCTTCCCAT 595 |||| ||| ||| ||||||| |||||||||| | || |||||| |||||||| ||||||| Sbjct 830 GAGA-GAAACAGATTAGTTCCTCATTTCCACGCAGA-GCCAGAAAATTGCCCGTTCCCAT 887 Query 596 GGGCAACAAGATCACCGGAGAATCTGCTTCGCCAAGAGACTTACCTGACTCTTGCCACGG 655 |||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 888 GGGCAAGAAGATCACCCGAGAATCTGCTTCGCCAAGAGACTTATCTGACGCTTGCCACGG 947 Query 656 TTTTCGTCTTGTTGAGATTGCTACAGTTGATTTCCCCCACAATGGTTGTGTTAGCGAAAT 715 | ||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||| Sbjct 948 TGTTCGTCTTGTTGAGATTACTACACTTGATTTCCCCCACAATGGTTGTGTTCGTGAAAT 1007 Query 716 CCACTTGGGGACGGGTTGCTCATAACATGAGACCGGGGAACCTTCT-GGAGCATACCCTT 774 ||||||||||||||| | ||| |||||||||| ||||||| || ||| ||||| | Sbjct 1008 TCACTTGGGGACGGGT-G-TCA-AACATGAGACTAGGGAACCC-CTTGGAACATACTGT- 1062 Query 775 G-CCATGTATCTCAAAGAACCTTGCATGAGTAGCAATTTGCAAGAAGGAGCCATGAATGC 833 | |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1063 GACCATGTATCTTAAAGAACCTTGCATGAGTAGCAATTTGCAGGAAGGAGCCATGAATGC 1122 Query 834 TAGAGCATGGGCTTCCAAGTCTTTGGCCACTGTCTCAATTGGGGAATCAAGCTCATCAAG 893 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1123 TAGAGCATGGGCTTCCAAGTCTTTGGCTACTGTCTCAATTGCAGAATCAAGCTCATCAAG 1182 Query 894 CAGAAGTGTTTCAGCTTCACAGTGACTTTATATTTTAACCTTCTTG 939 |||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1183 CAGAAGTGTTTCAGCTTCACAGTGACTTCATATTTTAACCATCTTG 1228 > AT1G34780.1 | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:12748571-12750383 REVERSE LENGTH=1456 Length=1456 Score = 411 bits (222), Expect = 8e-114 Identities = 607/783 (78%), Gaps = 65/783 (8%) Strand=Plus/Plus Query 186 TGTCACCGAGGGAGATGATCAG-TGGTTACAAATGGC-TTCTGATATGATTGATAAGAAC 243 |||||||||||| ||||| | | ||||| ||||| || || ||||||||| |||||||| Sbjct 439 TGTCACCGAGGGTGATGAGC-GTTGGTTGCAAATAGCATT-GGATATGATTCATAAGAAC 496 Query 244 AAGTGTGACTATGTGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGATTACTT 303 |||||||| ||||||||||| || |||||||||||||||||||| ||||| || | | || Sbjct 497 AAGTGTGATTATGTGGCTTTGCTTTTCTATGCATCATGGTGTCCATTCTCAAGGTCATTT 556 Query 304 AGACCAAGCTTT-GATCTTATGTCTTTGT-TATATTCATCGGTTCCTCACTTTGCAATTG 361 ||||| || ||| ||| |||| || || | | ||||| || ||||||| ||||| ||| Sbjct 557 AGACCGAG-TTTCGATGTTATCTC-TTCTCTCTATTCCTCCATTCCTCATTTTGCCATTA 614 Query 362 AGGAATCAT-CAGTTAAAG-CTAGTA-CCTTGTCCAAGTATGGAGTTCATGGGTTTCCTA 418 ||||||||| || || ||| |||| | |||| |||||||||||||||||||||||||| | Sbjct 615 AGGAATCATCCA-TT-AAGCCTAGCACCCTT-TCCAAGTATGGAGTTCATGGGTTTCCCA 671 Query 419 CTATCATCCTTATGAATTCAACAATG-GGCGTA-GTTTACCGGGGATCCAGAACT-CTAG 475 || || | ||| ||||||| |||||| || | | | ||||| ||| || ||| | || | Sbjct 672 CTCTCTTACTTTTGAATTCGACAATGCGG-GCACG-ATACCGAGGAACCCGAA-TGCTTG 728 Query 476 ATTCTCTTGTTGCCTTCTACAGTGATGTTACTGGAATTGA-AAAGCTGGATGAAACTTGG 534 ||||||||||||| ||||||||||||||||| || ||||| | | ||||| |||||| Sbjct 729 ATTCTCTTGTTGCTTTCTACAGTGATGTTACCGGCATTGAGACA-TTGGATAAAACTTCT 787 Query 535 GTTGAGAAGAACAG-GT-T-AGTTCATCAT-T---T--C-----C-ACACGA-AGCCAGA 578 | ||| || | || || | ||||| |||| | | | | |||| | ||||||| Sbjct 788 CTCGAG-AG-A-AGCGTATCAGTTCCTCATCTCGGTAACGAAAACAACAC-AGAGCCAGA 843 Query 579 GAATTGCCCCTTCCCATGGGCAACAAGATCACCGGAGAATCTGCTTCGCCAAGAGACTTA 638 || || || ||| | |||| ||||||| || |||||| ||||||| |||||||| || Sbjct 844 AAACTGTCCATTCACGTGGG---CAAGATCGCCTGAGAATATGCTTCGACAAGAGACCTA 900 Query 639 CCTGA-CTCTTGCCACGGTTTTCGTCTTGTTGAGATTGCTACAGTTGATTTCCCCCACAA 697 || | ||||||||| || |||||| ||||||||||||| || ||||| | || ||| Sbjct 901 TCT-AGCTCTTGCCATTGTATTCGTCCTGTTGAGATTGCTTCACTTGATATATCCTACAC 959 Query 698 TGGTTGTG-TTAGCGAAATCCACTTGGGGACGGGTTGCTCATAACATGAGACCGGGGAA- 755 | || ||| ||| ||| | ||||||| ||||| ||||||| ||||||||| | | || Sbjct 960 TCGTCGTGTTTA-TGAAGTTCACTTGGAGACGGATTGCTCAGAACATGAGA-CTAGAAAG 1017 Query 756 CCTTCTGGAGCATACC--C---TTGCCATG--TA--TCT-CAAAGAACCTTGCAT-G-AG 803 ||| || || |||||| | || | | | | | | ||| | | ||||| | || Sbjct 1018 CCTGCTAGAACATACCGTCGGGTTTCTAAGCCGAGCTGTACAATTATGCATGCATAGAAG 1077 Query 804 TAGCAATTTGCAAGAAGGAGCCATGAATGCTAGAGCATGGGCTTCCAAGTCTTTGGCCAC 863 |||||| |||| | ||| || ||||| |||||||||||||| || |||||||||||||| Sbjct 1078 AAGCAATCTGCAGGGAGGGGCTATGAACGCTAGAGCATGGGCCTCTAAGTCTTTGGCCAC 1137 Query 864 TGTCTCAATTGGGGAATCAAGCTCATCAAGCAGAAGT-GTTTCAGCTTCACAGTGACTTT 922 ||||||||||||||| ||||||||||||| |||||| ||| || |||| ||||||||| Sbjct 1138 TGTCTCAATTGGGGATTCAAGCTCATCAAACAGAAGAAGTT-CATCTTCTCAGTGACTTC 1196 Query 923 ATA 925 ||| Sbjct 1197 ATA 1199 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45914010358 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5