BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942696
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4... 1358 0.0
AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4... 368 6e-101
AT4G09110.1 | Symbols: | RING/U-box superfamily protein | chr4... 359 4e-98
> AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4:5815849-5816922
FORWARD LENGTH=1074
Length=1074
Score = 1358 bits (735), Expect = 0.0
Identities = 965/1077 (90%), Gaps = 12/1077 (1%)
Strand=Plus/Plus
Query 21 ATGACTATCTTCACTAGAGATTTCAGCCATCGGATCGTAGTATGTGTTTTATTGCCACTC 80
|||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1 ATGACTATCTTCACAAGAGATTTCAGCCATCGGATCCTAGCATGTGTTTTATTGCCACTC 60
Query 81 TTCCTTTTCCAATGTTTGCCTTACGTAATTTGCCAGCAAGAGTCCG---CAG-A--TCGC 134
|||||||||||||||||||||||||||| ||||||||||| ||| | ||| | ||||
Sbjct 61 TTCCTTTTCCAATGTTTGCCTTACGTAACTTGCCAGCAAGGGTCGGAATCAGCAGGTCGC 120
Query 135 AATGGAAGAAAC-AAAGTCTCATCGATAATTGGGATCGTTTTGCTTTCATTGTTCCTCTT 193
||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 AATGGAA-AAAGTAAAGAGTCATCGATAATTGGGATCGTTTTGCTTTCGTTGTTCCTCTT 179
Query 194 TCTTTTGGTTTTTTACTGCTTGCACTATGGATGTTGTAGTGAAGAGATTGAGGCAGGAGG 253
|||||||| |||| ||||| ||||||||||||||| |||||||| |||| |||||||
Sbjct 180 ACTTTTGGTCGTTTATTGCTTAAACTATGGATGTTGTATTGAAGAGAATGAGACAGGAGG 239
Query 254 TCATCAAGTGTTGCACAGTAGAGTGAGGTGTGGGATTGACAAGGATGTCATCGAGTCCTT 313
|||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 240 TCATGAAGTGTTACACAGTAGAGTGAGGCGTGGGATTGACAAGGACGTCATCGAGTCCTT 299
Query 314 TCCGGCTTTCCTCTATTCAGAGGTTAAAGGGCTCAAGATAGGCAAAGGCGGAGTAGAATG 373
|||||||||||| |||||||||||||||| | ||||||||||||| |||||||| |||||
Sbjct 300 TCCGGCTTTCCTATATTCAGAGGTTAAAGCGTTCAAGATAGGCAACGGCGGAGTTGAATG 359
Query 374 TGCAATTTG-CTTAAGCGAGTTTGAGGATGAAGAGTCGCTACGTTGGATGCCTCCTTGTA 432
||||||||| || | |||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 360 TGCAATTTGTCT-ATGCGAGTTTGAAGACGAAGAGCCGCTACGTTGGATGCCTCCTTGTA 418
Query 433 GCCACACCTTCCATGCTAATTGCATTGACGTATGGCTCTCTTCTCGGTCTACATGTCCAG 492
|||| || |||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 419 GCCATACTTTCCATGCTAATTGCATTGACGAATGGCTCTCTTCTCGGTCCACATGTCCCG 478
Query 493 TCTGTCGTGCAGATTTGTCTCTGAAACCCGGTGAGAGCTTTCCATATCCAAGCATGGATA 552
|||| |||||| ||||||||||||| ||||||| ||||||||| |||| || ||||||
Sbjct 479 TCTGCCGTGCAAATTTGTCTCTGAAGTCCGGTGACAGCTTTCCACATCCGAGTATGGATG 538
Query 553 TTGAAACAGGAAATGCA-AGGAGAGTTGTTCTTGAATCCCCCAACGAGATAAGCTTGACA 611
||||||| ||||||||| || |||| ||||| ||||||||| | |||| ||||||||||
Sbjct 539 TTGAAACGGGAAATGCACAG-AGAGGTGTTCAAGAATCCCCCGATGAGAGAAGCTTGACA 597
Query 612 GGTAACAGTGTGACATGGAACGATAATGCAAATTATAGAACACCTCGATCGAGATCTACA 671
|||| ||||| ||||| || ||||||||||||||| |||||||||||| |||||||||
Sbjct 598 GGTAGTAGTGTTACATGTAATAATAATGCAAATTATACAACACCTCGATCAAGATCTACA 657
Query 672 GGGTTATTGTCAAGCTGGCCTGTGGCTGAGATATTCTTCCCTCGATCTCATTCGACCGGA 731
||||||||||| ||||||| |||| ||||| ||||| ||||||||||||||||||| |||
Sbjct 658 GGGTTATTGTCGAGCTGGCATGTGCCTGAGCTATTCCTCCCTCGATCTCATTCGACTGGA 717
Query 732 CATTCACTGGTTCAACTAGGTGAGAATATAGATCGATTCACATTGCAGTTACCGGAGGAG 791
|||||| ||||||||| | || |||||||||| ||||||||| |||| ||||||||||||
Sbjct 718 CATTCATTGGTTCAACCATGTCAGAATATAGACCGATTCACACTGCAATTACCGGAGGAG 777
Query 792 GTACAAAGAGAATTGGTTAGCCTGAATCTGTTAAAGAGAGGCCACATAGCCTTACCTCGA 851
|| |||||| ||||||| |||||||| ||| |||||||| |||| |||||||||||||||
Sbjct 778 GTGCAAAGACAATTGGTAAGCCTGAACCTGATAAAGAGAAGCCATATAGCCTTACCTCGA 837
Query 852 GCCAGGAGTTCTAGACAAGGCTACAGGAGCGGAAGCGTTGGGAACGACAGAAGCGGTTTC 911
||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 838 GCCAGGAGTTCTAGACAGGGCTACAGGAGCGGAAGCGTTGGGAACGAGAGAACCGGTTTC 897
Query 912 TCTCAGGGACGGCAAACGCTCAGGCGAGCCATATCTATGTCGCTCTCTTTCTCTTTTCAA 971
||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct 898 TCTCAAGGACGGCAAACACTCAGGCGAGCCATATCTACGTCGCTATCTTTCTCTTTTCAA 957
Query 972 CCTGCTCCTATTCGGTCTACACTTGGCAGGGACAACCTAATACGAGAGACTTCACAAGCT 1031
||||||||| ||||||| ||||||| ||||||||| ||||| ||||||||||| ||||||
Sbjct 958 CCTGCTCCTGTTCGGTCCACACTTGACAGGGACAATCTAATGCGAGAGACTTCCCAAGCT 1017
Query 1032 AATGACGACGATTTTGGTGAACGGTCGTTCCAGCGCCTCATGCCAGAGATAATCTAA 1088
|||||| | ||||||||||||||||| ||||| |||||||||||||||| || ||||
Sbjct 1018 AATGACAAAGATTTTGGTGAACGGTCATTCCAACGCCTCATGCCAGAGAAAAACTAA 1074
> AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4:5813998-5815035
FORWARD LENGTH=1038
Length=1038
Score = 368 bits (199), Expect = 6e-101
Identities = 453/570 (79%), Gaps = 39/570 (7%)
Strand=Plus/Plus
Query 21 ATGACTATCTTCACTAGAGATTTCAGC--CATCGGATCGTAGT-ATGTGTTTTATTGCCA 77
|||| ||||||||| ||||| ||| | | |||| ||||| | | ||||| |||||||
Sbjct 1 ATGAATATCTTCAC--GAGATATCACCTTCCTCGGGTCGTA-TCAGGTGTTATATTGCCG 57
Query 78 CTCTTCCTTTTCCAAT-GTTTGCCTTACGTAATTTGCCAGCAAGAGTCCG---C-A-GAT 131
||||||||||||| || |||||||||||| | || ||||||||||| | | | |
Sbjct 58 CTCTTCCTTTTCC-ATCTTTTGCCTTACGTTACATGTCAGCAAGAGTCGGTACCAACAAA 116
Query 132 C-GCAATGGAAGAAA-CAAAGTCT---C--A-TCGATAATTGGGATCGTTTTGCTTTC-A 182
| ||| | | | ||| ||| ||| | | || ||||||| |||||| ||||| | |
Sbjct 117 CAGCATTAG-ACAAACCAATCTCTCAGCTGACTCAATAATTGCAATCGTTGTGCTTGCAA 175
Query 183 T-TGTT-CCTC-TTTCTTTTGGTTTTTTACTGCTTGCACTATGGAT-GT-TGTAGTGAAG 237
| | || || || |||| | || ||||||||| || || | | ||| ||||
Sbjct 176 TAT-TTATATCATTAGGCATGGTCTCTTGTTGCTTGCAC--TGCATATTCTATAGGGAAG 232
Query 238 AGATTGAGGCAGG-AGGTCATCAAGTGTTGCACAGTAGAGTGAGGTGTGGGATTGACAAG 296
|||||| ||| || |||||| | || || |||||||||| ||| ||||| | || |||
Sbjct 233 AGATTGGGGC-GGCAGGTCAAGATGTATTACACAGTAGAGCAAGGCGTGGGCTCGAGAAG 291
Query 297 GATGTCATCGAGTCCTTTCCGGCTTTCCTCTATTCAGAGGTTAAAGGGCTCAAGATAGGC 356
|| ||||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 292 GAAGTCATCGAGTCTTTTCCAACTTTCCTTTATTCAGAAGTTAAAGGGCTCAAGATAGGC 351
Query 357 AAAGGCGGAGTAGAATGTGCAATTTGCT-TAAGCGAGTTTGAGGATGAAGAGTCGCTACG 415
|||||||| ||||||||||||||||| | | ||||||||||||||| |||| |||||||
Sbjct 352 AAAGGCGGTGTAGAATGTGCAATTTG-TCTGAGCGAGTTTGAGGATCAAGAAACGCTACG 410
Query 416 TTGGATGCCTCCTTGTAGCCACACCTTCCATGCTAATTGCATTGACGTATGGCTCTCTTC 475
|||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct 411 TTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTC 470
Query 476 TCGGTCTACATGTCCAGTCTGTCGTGCAGATTTGTCTCTGAAACCCGGTGAGAGCTT-TC 534
| |||| |||||||| || ||||||||| || ||||||| |||||||||||||| || ||
Sbjct 471 TTGGTCCACATGTCCGGTTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAG-TTATC 529
Query 535 CATATCC-AAGCATGGATATTGAAACAGGA 563
|||||| || ||||||| ||||||| |||
Sbjct 530 CATATCTGAA-CATGGATGTTGAAACGGGA 558
> AT4G09110.1 | Symbols: | RING/U-box superfamily protein | chr4:5812488-5813396
FORWARD LENGTH=909
Length=909
Score = 359 bits (194), Expect = 4e-98
Identities = 290/336 (86%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 236 AGAGATTGAGGCAGG-AGGTCATCAAGTGTTGCACAGTAGAGTGAGGTGTGGGATTGACA 294
|||| ||||||| || | | || ||||||| |||||||||| |||| ||||| | || |
Sbjct 231 AGAGGTTGAGGC-GGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGCGTGGGCTCGAGA 289
Query 295 AGGATGTCATCGAGTCCTTTCCGGCTTTCCTCTATTCAGAGGTTAAAGGGCTCAAGATAG 354
|||| || | ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 290 AGGAACTCGTTGAGTCCTTTCCAATTTTCCTCTATTCGGAGGTTAAAGGGCTCAAGATAG 349
Query 355 GCAAAGGCGGAGTAGAATGTGCAATTTG-CTTAAGCGAGTTTGAGGATGAAGAGTCGCTA 413
|||||||||||||||||||||||||||| || ||||||||||| |||| |||| | |||
Sbjct 350 GCAAAGGCGGAGTAGAATGTGCAATTTGTCT-AAGCGAGTTTGTGGATAAAGAAACACTA 408
Query 414 CGTTGGATGCCTCCTTGTAGCCACACCTTCCATGCTAATTGCATTGACGTATGGCTCTCT 473
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 409 CGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATTGATGTGTGGCTCTCT 468
Query 474 TCTCGGTCTACATGTCCAGTCT-GTCGTGCAGATTTGTCTCTGAAACCCGGTGAGAGCTT 532
|||| ||| |||||||| | || |||||||| || ||||||| |||||||||||||| ||
Sbjct 469 TCTCAGTCCACATGTCCGG-CTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAG-TT 526
Query 533 -TCCATATCCAAGCATGGATATTGAAACAGGAAATG 567
||||||||| | || |||| ||||||| |||||||
Sbjct 527 ATCCATATCCGATCACGGATCTTGAAACGGGAAATG 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5