BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942757
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09760.2 | Symbols: | Protein kinase superfamily protein | ... 1644 0.0
> AT4G09760.2 | Symbols: | Protein kinase superfamily protein
| chr4:6148758-6151245 REVERSE LENGTH=1333
Length=1333
Score = 1644 bits (890), Expect = 0.0
Identities = 1024/1087 (94%), Gaps = 16/1087 (1%)
Strand=Plus/Plus
Query 1 TTTGATTGTTTTTTCTTCTTATAGATGGCAATAGGAATCTTTGGATTGATCCCAAGTTCA 60
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 72 TTTGATTGTTTTTTTTTCTTATAGATGGCGGTAGGAATCTTTGGATTGATCCCAAGCTCA 131
Query 61 TCACCAGACGAGCTAAGGAAGATTCTTCAAGCACTTTCGACGAAATGGGGAGACGTAGTT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 132 TCACCAGACGAGCTAAGGAAGATTCTTCAAGCGCTTTCGACGAAATGGGGAGACGTAGTT 191
Query 121 GAGGATTTTGAGAGTCTTGAAGTGAAACCAATGAAAGGAGCGATGACTAACGAAGTGTTC 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 192 GAGGATTTTGAGAGTCTTGAAGTGAAGCCAATGAAAGGAGCGATGACTAACGAAGTGTTC 251
Query 181 ATGGTTAGTTGGCCAAGAAAAGAAACGAATCTTCGATGTAGGAAACTTCTTGTTCGTGTT 240
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 252 ATGGTTAGTTGGCCTAGAAAAGAAACGAATCTTCGATGTAGGAAGCTTCTTGTTCGTGTT 311
Query 241 TATGGAGAAGGCGTTGAGCTTTTCTTCAACAGAGACGATGAGATTCGTACTTTTGAGTAT 300
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 312 TATGGTGAAGGTGTTGAGCTTTTCTTCAATAGAGACGATGAGATTCGTACTTTTGAGTAT 371
Query 301 GTAGCTCGTCATGGCCATGGACCTACTCTCCTTGGACGCTTCGCCGGCGGTAGAGTCGAA 360
|| ||||||||||| || || ||||| || ||||| ||||||||||||||||||||||||
Sbjct 372 GTTGCTCGTCATGGTCACGGTCCTACACTTCTTGGTCGCTTCGCCGGCGGTAGAGTCGAA 431
Query 361 GAGTTTATCCATGCTAGGACACTATCGGCAACCGATCTTCGTGATCCGAACGTATCAGCT 420
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 432 GAGTTTATCCATGCCCGGACACTATCGGCAACCGATCTTCGTGATCCGAACATATCAGCT 491
Query 421 CTGGTTGCATCTAAGCTAAGAAGATTTCACAGCATACACATTCCTGGAGATAGAAATCTG 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 492 CTTGTTGCATCTAAGCTAAGAAGATTTCACAGCATACACATTCCTGGAGATAGAATTATG 551
Query 481 CTCATATGGGACAGGATGAGGACTTGGGTAGGACAAGCCAAGAATCTGTGTTCAAGTGAA 540
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 552 CTCATCTGGGACAGGATGAGGACTTGGGTAGGACAAGCCAAGAATCTATGTTCAAATGAA 611
Query 541 CACTCAACAGAGTTTGGTCTAGACGACATTGAAGATGAAATCAACATGCTGGAACAAGAA 600
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 612 CATTCAACAGAGTTTGGTCTAGACGACATTGAAGATGAAATCAACCTGCTGGAACAAGAA 671
Query 601 GTGAACAATGAACAAGAGATTGGCTTCTGTCACAATGATTTGCAGTATGGTAACATCATG 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 672 GTGAACAATGAACAAGAGATTGGCTTCTGTCACAATGACTTGCAGTATGGTAACATCATG 731
Query 661 ATTGATGAAGACACCAATGCCATTACTATCATTGATTATGAGTATGCAAGTTATAATCCA 720
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 732 ATTGATGAAGAAACCAATGCAATTACTATCATTGATTATGAGTATGCAAGTTATAATCCG 791
Query 721 ATCGCTTACGACATAGCAAATCATTTCTGTGAAATGGCGGCAGATTATCATTCTGACACT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 792 ATCGCTTACGACATAGCAAATCATTTCTGTGAAATGGCGGCAGATTATCATTCAAACACT 851
Query 781 CCTCATATCTTGGACTACACTCTATATCCAGGAGAAGAAGAAAGGAGGAGATTCATCTAT 840
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 852 CCTCATATCTTGGACTACACTCTATATCCAGGGGAAGAAGAAAGGAGGAGATTCATATGT 911
Query 841 AACTACCTCACCTCTTCAGGTGAAGAAG-A-----------CATAGAACAG-TTCTTGGA 887
|||||| | ||||||||||||||||||| | ||||||||| || |||||
Sbjct 912 AACTACTTAACCTCTTCAGGTGAAGAAGCAAGAGAAGAAGACATAGAACAACTT-TTGGA 970
Query 888 TGATATTGACAAGTATACATTGGCAAGCCATCTCTTCTGGGGTTTATGGGGAATCATCTC 947
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 971 TGATATTGAGAAGTATACATTGGCAAGCCATCTCTTCTGGGGTTTATGGGGAATCATATC 1030
Query 948 TGGTTATGTGAACAAGATTGAGTTTGATTATATCGAGTATTCGAGGCAGAGATTCAAACA 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TGGTTATGTGAACAAGATTGAGTTTGATTATATCGAGTATTCGAGGCAGAGATTCAAACA 1090
Query 1008 GTATTGGATTCGAAAGCCACAAG-TTTTATCTTTCTACCCATCCTAATAAGTAAATTCTC 1066
||||||| |||| |||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 1091 GTATTGGCTTCGCAAGCCA-AAGCTTTTATCTTTCTTCCCATCCTAATAAGTAAATTCTC 1149
Query 1067 TATTTAC 1073
| |||||
Sbjct 1150 TGTTTAC 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5