BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942815

Length=682
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36720.1 | Symbols:  | Acyl-CoA N-acyltransferase with RING/...   547    4e-155


> AT2G36720.1 | Symbols:  | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type 
zinc finger domain | chr2:15393071-15399418 
FORWARD LENGTH=3629
Length=3629

 Score =  547 bits (296),  Expect = 4e-155
 Identities = 318/329 (97%), Gaps = 0/329 (0%)
 Strand=Plus/Plus

Query  270   AATGCGACTGTTGTTGCTGCTGGACTACTAAGAGTATTTGGCCGAGAGGTTGCAGAACTT  329
             ||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct  2987  AATGCGACTGTTGTTTCTGCTGGACTATTACGAGTATTTGGCCGAGAGGTTGCAGAACTT  3046

Query  330   CCATTAGTTGCAACACGCATGTGCAGCCGAGAGAAGGGCTACTTTCAATTGCTCTTTTCT  389
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  3047  CCATTAGTTGCAACACGCATGTGCAGCCGAGAGAAGGGCTACTTTCAATTGCTCTTTTCC  3106

Query  390   TGCATTGAGAAGCTACTCTCATCCCTGAATGTTGGAAGCATAGTGGTTCCAGCAGCTGAA  449
             |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct  3107  TGCATTGAGAAGCTACTCTCATCCCTGAATGTTGAAAGCATCGTGGTTCCAGCAGCTGAA  3166

Query  450   GAGGAAGAGCATTTATGGATGAACAAATTTGGGTTCAGAAAACTTGCACCTGAACAACTC  509
             |||| |||||  |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  3167  GAGGCAGAGCCCTTATGGATGAACAAATTTGGGTTCAGAAAACTTGCACCTGAACAGCTC  3226

Query  510   AGTAAGTATATAAAGATATGCTACCAAATGGTGAGGTTCAAAGGAGCATCCATGCTGCAG  569
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3227  AGTAAGTATATAAAGATATGCTACCAAATGGTGAGGTTCAAAGGAGCATCCATGCTGCAG  3286

Query  570   AAACCAGTTGATTCACACCAAATCATTGA  598
             |||||||| ||||||||||||||||||||
Sbjct  3287  AAACCAGTCGATTCACACCAAATCATTGA  3315


 Score =  226 bits (122),  Expect = 2e-58
 Identities = 128/131 (98%), Gaps = 0/131 (0%)
 Strand=Plus/Plus

Query  141   TTAAAAGAATTACCTAAAGGAAATTGGTTTTGCTCCATGGACTGTACGAGGATCAACTCC  200
             ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  2615  TTAAAGGAATTACCTAAAGGAAACTGGTTTTGCTCCATGGACTGTACGAGGATCAACTCC  2674

Query  201   ACATTACAAAAGTTACTTCTTGGTGGGGCGGAGAAGCTTTCAGATTCTTCTATGGGAATA  260
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  2675  ACATTACAAAAGTTACTTCTTGGTGGGGCGGAGAAGCTTTCAGATTCTTCTTTGGGAATA  2734

Query  261   ATACAGACGAA  271
             |||||||||||
Sbjct  2735  ATACAGACGAA  2745



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33003834579


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5