BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942960
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11220.1 | Symbols: BTI2, RTNLB2 | VIRB2-interacting protein... 1219 0.0
> AT4G11220.1 | Symbols: BTI2, RTNLB2 | VIRB2-interacting protein
2 | chr4:6837911-6839795 REVERSE LENGTH=1298
Length=1298
Score = 1219 bits (660), Expect = 0.0
Identities = 780/838 (93%), Gaps = 8/838 (1%)
Strand=Plus/Plus
Query 11 ATCGGTAACAATGGCGGATGAACATAAGCATGAAGAATCTTCACCTAATTTGGATCCAGC 70
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 ATCGGAAACAATGGCGGATGAACATAAGCATGAAGAATCTTCACCTAATTTGGATCCAGC 267
Query 71 GGTGGAAGTTGTAGAGAGGGAATCGTTGATGGAGAAGATATCGGAGAAGATTCATCACAA 130
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 268 AGTGGAGGTTGTAGAGAGGGAATCGTTGATGGAGAAGTTATCGGAGAAGATCCATCACAA 327
Query 131 AGGTGATTCTTCGTCGTCGTCTTCATCAGATGATGATGAGAAAGAAAAGAAGTCTTC-TC 189
||||||||| ||||| || || ||||||||||| || | || || ||||||||||| ||
Sbjct 328 AGGTGATTCGTCGTCTTCATCATCATCAGATGACGA--A-AACGAGAAGAAGTCTTCGTC 384
Query 190 --CGTCTCCGAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTTGGTAGAGAGAGACCTGT 247
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 385 ATCGTCTCCAAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTCGGAAGAGAGAGACCTGT 444
Query 248 GCATAAGATTCTCGGCGGTGGAAAACCGGCGGATATATTTATGTGGAAGAACAAGAAGAT 307
|||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 445 TCATAAGGTTCTCGGCGGCGGAAAACCGGCAGATATATTTATGTGGAAGGACAAGAAAAT 504
Query 308 GTCAGGTGGTGTATTTGGTGGTGCTACAGTAGCGTGGGTGTTATTTGAATTGATGGAGTA 367
|||||| ||||||||||| ||||||||||| || |||||| |||||||||||||||||||
Sbjct 505 GTCAGGAGGTGTATTTGGCGGTGCTACAGTGGCATGGGTGCTATTTGAATTGATGGAGTA 564
Query 368 TCATCTTCTTACTCTGCTATGTCACGTTATGATCGTTGCGCTTGCTGTGTTGTTTCTATG 427
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 565 TCATCTTCTTACTCTGTTATGTCACGTTATGATCGTTGCTCTTGCTGTGTTGTTTCTATG 624
Query 428 GTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCCCAAGTACATATCCC 487
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 625 GTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCTGAAGTTCATATCCC 684
Query 488 TGAAGAACCTTTTCTTCAGCTTGCTTCGGGTCTTAGAATCGAAATCAACCGTGGGTTCTC 547
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 685 TGAAGAACCTCTTCTTCAGCTTGCTTCGGGTCTTAGAATCGAAATCAACCGTGGGATCTC 744
Query 548 TTCTCTTCGTGAGATTGCATCTGGAAGGGATCTCAAGAAATTCCTCTCTGCTATTGCCGG 607
|||||||||||||||||| || || |||||| ||||||| ||||||||||||||||||||
Sbjct 745 TTCTCTTCGTGAGATTGCGTCGGGGAGGGATATCAAGAAGTTCCTCTCTGCTATTGCCGG 804
Query 608 ATTGTGGGTTTTATC-AGTCTTGGGCGGATGCTGTTGTTTCTTGACATTGGCATACATAG 666
|||||||||| |||| | |||||||||| |||| | ||||||||||||||||||||||||
Sbjct 805 ATTGTGGGTTCTATCGA-TCTTGGGCGGCTGCTATAGTTTCTTGACATTGGCATACATAG 863
Query 667 CTCTGGTTCTGCTCTTCACTGTTCCTCTTCTCTACGACAAATACGAAGACAAAGTAGACG 726
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 864 CTCTGGTTCTGCTCTTCACTGTTCCTCTTTTCTACGACAAGTACGAAGACAAAGTAGACT 923
Query 727 CATACGGTGAGAAAGCAATGGCGGAGTTGAAGAAGCAATACGCTGTGTTCGACGCAAAGG 786
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 924 CATACGGTGAGAAAGCAATGGCTGAGTTGAAGAAGCAATACGCTGTGTTGGACGCAAAGG 983
Query 787 TATTGAGCAAAATCCCAAGGGGACCTTTGAAAGACAAGAAGAAGGATTAGtttttttt 844
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 984 TATTCAGCAAAATCCCAAGAGGACCGTTGAAAGACAAGAAGAAGGATTAGTTTTTTTT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5