BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943103 Length=776 Score E Sequences producing significant alignments: (Bits) Value AT4G12060.1 | Symbols: | Double Clp-N motif protein | chr4:722... 1194 0.0 > AT4G12060.1 | Symbols: | Double Clp-N motif protein | chr4:7228007-7229941 REVERSE LENGTH=1031 Length=1031 Score = 1194 bits (646), Expect = 0.0 Identities = 737/779 (95%), Gaps = 13/779 (2%) Strand=Plus/Plus Query 1 ATCCAGACACATTCGCGAAAATGGCGGCTCACTCTTCTTGCAACTTTGCTTTGACGAATC 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24 ATCCAGACACACTCGCGAAAATGGCGGCTCACTCTTCTTGCAACTTTGCTTTGACGAATC 83 Query 61 CGATTATCTCACAAATCGATTCTTTCTCTAAGCAGAAACAATCTGTTCCATTATACTTCT 120 |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 84 CGATCATCTCACAAATCGATTCTTTCTCTAAGAAGAAACTATCTGTTCCATTATACTTCT 143 Query 121 TCTCTACAAGAAACCCTCTAAAAGCTTTGACGAATCCATGGTTAGGCGTTGTTGATTCAT 180 |||||||||| |||||| ||||||||||| |||||||||||||||||||||| Sbjct 144 TCTCTACAAG---------AAAAGCATTGACGAATCCTTGGTTAGGCGTTGTTGATTCAT 194 Query 181 CCCTCTCTCTCACTTCTCCAGTCTCCGCTCTACAAAGTACTCGCCGAAGAAGAATCCATA 240 |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 195 CCCTCTCTCTCACTTCTCCAGTCTCCGCTCTACAAACTAATCGCCCAAGAAGAATCCATA 254 Query 241 AATCCGTCATCTCCAGCTTACCCACCGCGAATCCAGATTTAGTGGTATCTGATGCGAAAA 300 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 255 AATCCGCCATCTCCAGCTTACCCACCGCGAATCCAGATTTAGTGGTTTCTGATGCGAAAA 314 Query 301 AGCCCAAATGGTCATGGAGAGCAATTAAATCATTTGCAATGGGAGAGCTTGAAGCTAGGA 360 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 315 AGCCCAAATGGTCATGGAGGGCAATTAAATCATTTGCAATGGGAGAGCTTGAAGCTAGGA 374 Query 361 AGCTCAAGTATCCAAGTACTGGAACTGAAGCACTTCTCATGGGTATTTTGATTGAAGGAA 420 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 375 AGCTCAAGTATCCAAATACTGGAACTGAAGCACTTCTCATGGGTATTTTGATTGAAGGAA 434 Query 421 CTAGTTTTACTTCAAAGTTTTTGCGGGCGAATAAGATAATGCTTTACAAAGTTCGTGAAG 480 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 435 CTAGTTTTACTTCAAAGTTTTTGCGGGCGAATAAGATTATGCTTTACAAAGTGCGTGAAG 494 Query 481 AAACGATCAAGTTACTAGGAAAGGCAGATATGTATTTCTTTAGCCCCGAACATCCTCCAT 540 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 495 AAACGGTCAAGTTACTAGGAAAGGCAGATATGTATTTCTTTAGCCCGGAACATCCTCCTT 554 Query 541 TAACCGAAGATGCTCAACGAGCACTTGACTCTGCTGTTGATCAGAATCGAAAAGCAGGTG 600 |||| |||||||||||| ||||||||||||||||| | |||||||||| ||||||||||| Sbjct 555 TAACTGAAGATGCTCAAAGAGCACTTGACTCTGCTCTGGATCAGAATCTAAAAGCAGGTG 614 Query 601 GTATCGGGGAAGTAATGCCAGCACATATACTACTGGGGATTTGGTCTGAAGTTGAATCTC 660 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 615 GTATCGGGGAAGTAATGCCAGCACATATACTACTTGGGATTTGGTCTGAAGTTGAATCTC 674 Query 661 CAGGTCACAAGATACTAGCAACTCTTGGTTTCACTGATGAAAAATCTAAAGAGTTAGAGT 720 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 675 CAGGTCACAAGATACTGGCAACTCTTGGTTTCACTGATGAGAAATCTAAAGAGTTAGAGT 734 Query 721 CTTTTGCCTC-GACATCTGGATTTCTAGATGAATAGTGTATTACATC--TATCATTTCT 776 |||||||||| || |||||| ||| |||||||||||| ||||||||| |||||||||| Sbjct 735 CTTTTGCCTCTGA-ATCTGGCTTTTTAGATGAATAGTATATTACATCCATATCATTTCT 792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37725844397 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5