BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943163
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12470.1 | Symbols: AZI1 | azelaic acid induced 1 | chr4:740... 420 7e-117
AT4G12500.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 416 9e-116
AT4G12490.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 405 2e-112
AT4G12480.1 | Symbols: pEARLI 1 | Bifunctional inhibitor/lipid-... 399 9e-111
> AT4G12470.1 | Symbols: AZI1 | azelaic acid induced 1 | chr4:7401109-7401907
REVERSE LENGTH=799
Length=799
Score = 420 bits (227), Expect = 7e-117
Identities = 423/511 (83%), Gaps = 39/511 (8%)
Strand=Plus/Plus
Query 8 TGAAGAAAAATAAC-AATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCT 66
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 37 TGAA-AAAAAAAACAAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCT 95
Query 67 CAACATCCtttttttCACCTTAACCGTTGCTACTGATTGTAAATGCAACCCAAGTCCT-A 125
||||||||| |||||||||||||||||||| || |||| || ||||| ||||||||| |
Sbjct 96 CAACATCCTCTTTTTCACCTTAACCGTTGCAACAAATTGCAACTGCAAGCCAAGTCCTAA 155
Query 126 AGC--A--CAGT-CCTAG-GGT---CCCAA--C--TCCTA-G-GGT-C-CCA---ATTCC 165
| | | |||| || || | ||||| | ||| | | | | ||| |||
Sbjct 156 ACCAAAGCCAGTCCCAAGTCCTAAGCCCAAGCCGGTCCAATGTCCTCCTCCACCCCGTCC 215
Query 166 TTCGGTCCCAA---C---TCCT---TCGGTCCCAACTCCGA-GCACCCCAGGCTCATCTA 215
||| ||||||| | |||| ||||| || |||| | ||||||| || |||||
Sbjct 216 TTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCC-ACGCACCCCTGGTTCATCCG 274
Query 216 G-AA-A-CTGTCCTATCGATGCTCTC-AGACTCGGTGTATGTGCAAATGTCCTAAGCGGT 271
| || | ||||||||| ||||||||| || ||||||||||||||||||||| ||||| ||
Sbjct 275 GAAACAGCTGTCCTATTGATGCTCTCAAG-CTCGGTGTATGTGCAAATGTCTTAAGCAGT 333
Query 272 CTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCCATGCTGCTCGCTCATCCAAGGT 331
||||| ||| | ||||||||||||||||| |||| | ||| ||||||||||||||||||
Sbjct 334 CTACTCAACATCCAGTTGGGACAGCCATCCTCTCAACAATGTTGCTCGCTCATCCAAGGT 393
Query 332 TTGGTTGACCTCGACGCTGCCATTTGCCTCTGCACTGCTCTTAGGGCTAACGTTCTCGGT 391
||||||||| |||||||||| ||||| || ||||||||||| |||||||||||||| |||
Sbjct 394 TTGGTTGACGTCGACGCTGCGATTTGTCTATGCACTGCTCTGAGGGCTAACGTTCTTGGT 453
Query 392 ATCAACCTTAACGTTCCTATATCTCTCAGCGTTCTTCTCAACGTTTGTAACAGAAGGCTT 451
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 454 ATCAACCTTAACGTTCCGATATCTCTCAGCGTTCTTCTCAACGTTTGTAACAGAAAGCTT 513
Query 452 CCGTCTGGCTTCCAATGTGCTTGAACGATAT 482
|| ||||| ||||||||||||||| | ||||
Sbjct 514 CCATCTGGTTTCCAATGTGCTTGAGCAATAT 544
> AT4G12500.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7414150-7414927
REVERSE LENGTH=778
Length=778
Score = 416 bits (225), Expect = 9e-116
Identities = 263/282 (93%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 192 CTCCGAGCACCCCAGGCTCATCTAGAAACTGTCCTATCGATGCTCTCAGACTCGGTGTAT 251
||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||| |
Sbjct 276 CTCCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTCAGACTCGGTGTGT 335
Query 252 GTGCAAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCCAT 311
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 336 GTGCGAATGTCCTAAGTGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAACCAT 395
Query 312 GCTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGCCTCTGCACTGCTC 371
||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |
Sbjct 396 GCTGCTCGCTCATCCAAGGTTTGGTTGACCTTGACGCTGCGATTTGTCTCTGCACTGCCC 455
Query 372 TTAGGGCTAACGTTCTCGGTATCAACCTTAACGTTCCTATATCTCTCAGCGTTCTTCTCA 431
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 456 TTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTCTTCTCA 515
Query 432 ACGTTTGTAACAGAAGGCTTCCGTCTGGCTTCCAATGTGCTT 473
||||||| ||||||||||||||||||| |||||||||||||
Sbjct 516 ACGTTTGCAACAGAAGGCTTCCGTCTGATTTCCAATGTGCTT 557
Score = 196 bits (106), Expect = 1e-49
Identities = 168/197 (85%), Gaps = 8/197 (4%)
Strand=Plus/Plus
Query 1 AAAACACTGAAGAAAAATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTT 60
|||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 5 AAAACACTAAAG-AAAATACCAATGGCTTCAAAGAACTCAACCTCTCTTGCTCTTTTCTT 63
Query 61 TGCCCTCAACATCCtttttttCACCTTAACCGTTGCTACTGATTGTAAATGCAACCCAAG 120
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 64 TGCCCTCAACATCCTTTTTTTCACCTTAACCACTGCTACTGATTGTCGATGCAACCTAAG 123
Query 121 TCCTAAGCAC-AGTCCTAGGGTCCCAACTCCTAGGGTCCCAATTCCTTCGGT-CCCAACT 178
|||||||| | || | || |||||| ||| | |||||| | |||| | | ||||| |
Sbjct 124 TCCTAAGC-CTAGGAC--GG-TCCCAAGTCCAAAGGTCCCGAGTCCTAAG-TACCCAAGT 178
Query 179 CCTTCGGTCCCAACTCC 195
|||||| | |||| |||
Sbjct 179 CCTTCGATTCCAAGTCC 195
> AT4G12490.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7409621-7410406
REVERSE LENGTH=786
Length=786
Score = 405 bits (219), Expect = 2e-112
Identities = 267/291 (92%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 192 CTCCGAGCACCCCAGGCTCATCTAGAAACTGTCCTATCGATGCTCTCAGACTCGGTGTAT 251
||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 294 CTCCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTCAGACTCGGTGTAT 353
Query 252 GTGCAAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCCAT 311
|||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 354 GTGCGAATGTGCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCACCTCAACCAT 413
Query 312 GCTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGCCTCTGCACTGCTC 371
||||||| ||||| ||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 414 GCTGCTCACTCATTCAAGGTTTGGTTGACCTTGACGCTGCGGTTTGCCTATGCACTGCTC 473
Query 372 TTAGGGCTAACGTTCTCGGTATCAACCTTAACGTTCCTATATCTCTCAGCGTTCTTCTCA 431
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 474 TTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTCTTCTCA 533
Query 432 ACGTTTGTAACAGAAGGCTTCCGTCTGGCTTCCAATGTGCTTGAACGATAT 482
||||||| |||||||||||||||||| ||||||||||||||| |||||
Sbjct 534 ACGTTTGCAACAGAAGGCTTCCGTCTAATTTCCAATGTGCTTGAGGGATAT 584
Score = 228 bits (123), Expect = 5e-59
Identities = 162/180 (90%), Gaps = 5/180 (3%)
Strand=Plus/Plus
Query 17 ATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCtt 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 ATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCTT 82
Query 77 tttttCACCTTAACCGTTGCTACTGATTGTAAATGCAACCCAAGTCCTAAGCAC-AGTCC 135
|||||||||||||||| || |||| |||||| ||||||||| |||||||||| | || ||
Sbjct 83 TTTTTCACCTTAACCGCTGGTACTAATTGTAGATGCAACCCGAGTCCTAAGC-CTAGGCC 141
Query 136 TAGGGTCCCAACTCCTAGGGTCCCAATTCCTTCGGTCCCAACTCCTTCGGTCCCAACTCC 195
| |||||| ||||| |||||||| |||| ||||||||||||||||||||||| |||
Sbjct 142 --GC-TCCCAAATCCTAAGGTCCCAAGTCCTAAGGTCCCAACTCCTTCGGTCCCAAGTCC 198
> AT4G12480.1 | Symbols: pEARLI 1 | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein
| chr4:7406105-7406937 REVERSE LENGTH=833
Length=833
Score = 399 bits (216), Expect = 9e-111
Identities = 310/354 (88%), Gaps = 11/354 (3%)
Strand=Plus/Plus
Query 139 GGTCCCAACTCCTAGGGTCCCAATTCCTTCGGTCCCAA---CT---CCT---TCGGTCCC 189
|||||||| |||| || |||| |||||||||||||| || ||| ||||| |
Sbjct 222 GGTCCCAAGTCCTTCAGTACCAAGTCCTTCGGTCCCAAGTCCTAACCCTAGGCCGGTCAC 281
Query 190 AACTCCGAGCACCCCAGGCTCATCTAGAAACTGTCCTATCGATGCTCTCAGACTCGGTGT 249
||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 282 GCCTCCGAGAACCCCTGGCTCATCTGGAAACTGTCCTATCGATGCTCTCAGACTCGGTGT 341
Query 250 ATGTGCAAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCC 309
|||||| || || ||||| ||||||| ||| | || ||||| |||||||||||||| ||
Sbjct 342 ATGTGCGAACGTTTTAAGCAGTCTACTCAACATTCAATTGGGTCAGCCATCAGCTCAACC 401
Query 310 ATGCTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGCCTCTGCACTGC 369
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 402 ATGTTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGTCTTTGCACTGC 461
Query 370 TCTTAGGGCTAACGTTCTCGGTATCAACCTTAACGTTCCTATATCTCTCAGCGTTCTTCT 429
||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 462 GCTTAGGGCTAACGTTCTTGGTATCAACCTTAACGTCCCGATATCTCTCAGTGTTCTTCT 521
Query 430 CAACGTTTGTAACAGAA-GGCTTCCGTCTGGCTTCCAATGTGCTTGAACGATAT 482
||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 522 CAACGTTTGTAACAGAAAGG-TTCCGTCTGGCTTCCAATGTGCTTGAAGGATAT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5