BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943195
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04020.1 | Symbols: FIB | fibrillin | chr4:1932144-1933950 F... 1380 0.0
AT4G22240.1 | Symbols: | Plastid-lipid associated protein PAP ... 706 0.0
> AT4G04020.1 | Symbols: FIB | fibrillin | chr4:1932144-1933950
FORWARD LENGTH=1378
Length=1378
Score = 1380 bits (747), Expect = 0.0
Identities = 923/1006 (92%), Gaps = 19/1006 (2%)
Strand=Plus/Plus
Query 5 Gaa-aaaaaaaacaaaaaTGGCGACGGTACCATTGTTCAGCCAATTCCCCTGCAAAATCC 63
||| || ||| |||||||||||||||||||||||||||| ||| || |||||||||| ||
Sbjct 1 GAAGAACAAACACAAAAATGGCGACGGTACCATTGTTCACCCAGTTTCCCTGCAAAACCC 60
Query 64 TAGTTCCAAGCTCATCAAACTCTAAATC-CCAGTCAAAATCTCCGATTCTACTGCCGATT 122
|| |||||||||||||||| ||||| | ||| || ||||||||||| ||||| ||||||
Sbjct 61 TAAATCCAAGCTCATCAAACACTAAA-CACCAATCGAAATCTCCGATCCTACTACCGATT 119
Query 123 AACTCAGTCAATCGGCGATCGGAGATTGGAATCTCTGTTCATCGGCCAGATTTCAAAATC 182
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 AACTCAATAAATCGGCGATCGGAGATTGGAGTCTCTGTTCATCGGCCAGATTTCAAAATC 179
Query 183 CGAGCCACGGACATCGACGACGAATGGGGTCAAGAAGGAGTTGAGAGAGTATTAT-CCTC 241
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||
Sbjct 180 CGAGCGACGGACATCGACGACGAATGGGGTCAAGATGGAGTGGAGAGAGTATT-TGCCTC 238
Query 242 ATCGTC-ACCAGTATCGGTGGCGGAGAAAGTAGCTGATGAAGCAATCGAATCCGCGGAGG 300
||| || ||| |||||||| || || | | | ||||||||||||||| |||||
Sbjct 239 ATCTTCAACC-GTATCGGT-----AG-CAG-A--T-A--AAGCAATCGAATCCGTGGAGG 285
Query 301 AGACGGAGAGGCTAAAGAGATCGCTAGCGGATTCGTTGTACGGAACAGATCGAGGTTTAA 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 286 AGACGGAGAGGCTAAAGAGATCACTAGCGGATTCGTTGTACGGAACAGATCGAGGTTTAA 345
Query 361 GCGCATCTAGCGATACGAGAGCGGAGATCAGTGAGCTTATCACACAGCTCGAGTCTAAGA 420
||| ||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 346 GCGTATCGAGTGATACGAGAGCTGAGATCAGCGAGCTCATCACACAGCTCGAGTCTAAGA 405
Query 421 ACCCTACTCCAGCTCCTAACGAAGCTCTGTTTCTCCTCAACGGCAAATGGATTCTCGCGT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 406 ACCCTACTCCAGCTCCTAACGAAGCTCTGTTTCTCCTCAACGGCAAATGGATCCTCGCCT 465
Query 481 ACACGTCGTTCGTGAGTTTGTTCCCATTGCTCTCACGAAGAATTGAACCGTTGGTTAAAG 540
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ACACGTCGTTCGTGGGGTTGTTCCCATTGCTCTCACGAAGAATTGAACCGTTGGTTAAAG 525
Query 541 TGGATGAGATCTCACAGACCATTGATTCCGATAGCTTCACCGTTCAAAATTCTGTTCGGT 600
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 526 TGGATGAGATCTCACAAACCATTGATTCCGATAGCTTCACCGTTCAAAACTCTGTCCGGT 585
Query 601 TTGCTGGTCCATTTTCCACTACATCGTTTAGCACTAACGCTAAGTTCGAAATCCGAAGTC 660
| |||||||| |||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 586 TCGCTGGTCCGTTTTCCACAACGTCGTTTAGCACCAACGCTAAGTTTGAAATCCGAAGTC 645
Query 661 CTAAACGCGTCCAGATTAAGTTCGAGCAAGGCGTTATTGGGACTCCTCAGCTAACGGATT 720
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 646 CTAAACGTGTCCAGATTAAGTTCGAGCAAGGTGTTATAGGGACTCCTCAGCTAACGGATT 705
Query 721 CGATTGAAATCCCTGAATCCGTGGAGGTTCTTGGTCAGAAAATCGATCTCAACCCCATTA 780
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 706 CGATTGAAATACCGGAATCCGTGGAGGTTCTTGGTCAGAAAATCGATCTCAATCCCATTA 765
Query 781 AAGGGTTACTTACATCGGTCCAAGACACGGCTTCTTCAGTGGCTAGAACCATTTCAAACC 840
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 766 AAGGTTTACTTACATCAGTCCAAGACACTGCTTCTTCAGTGGCTAGAACCATTTCAAACC 825
Query 841 AACCACCATTAAAGTTTTCTCTGCCTAGTGATAACACACAGTCGTGGCTGCTCACGACTT 900
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 826 AACCACCATTGAAGTTTTCTCTGCCTAGTGACAACACGCAGTCGTGGCTGCTCACAACTT 885
Query 901 ATCTCGACAAAGACCTTAGGATCTCTAGAGGCGATGGCGGAAGCGTCTTTGTTCTCATCA 960
|||||||||| |||||| ||||||| ||||||||||| |||||||||| ||| |||||||
Sbjct 886 ATCTCGACAAGGACCTTCGGATCTCGAGAGGCGATGGTGGAAGCGTCTATGTGCTCATCA 945
Query 961 AAGAAGGAAGCTCTCTCTTAAACCCTTAAATCATAATTACTCGCAT 1006
|||||||||||||||||||||||||||||||||| || |||| |||
Sbjct 946 AAGAAGGAAGCTCTCTCTTAAACCCTTAAATCATCATAACTCTCAT 991
> AT4G22240.1 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr4:11765803-11767304 REVERSE
LENGTH=1297
Length=1297
Score = 706 bits (382), Expect = 0.0
Identities = 608/717 (85%), Gaps = 16/717 (2%)
Strand=Plus/Plus
Query 279 GAAGCAATCGAATCCGCGGAGGAGACGGAGAGGCTAAAGAGATCGCTAGCGGATTCGTTG 338
|||||||| ||| || ||| ||||||||| |||||||||||||||| | ||||||||||
Sbjct 300 GAAGCAATTGAAGACGTGGAAGAGACGGAGCGGCTAAAGAGATCGCTCGTGGATTCGTTG 359
Query 339 TACGGAACAGATCGAGGTTTAAGCGCATCTAGCGATACGAGAGCGGAGATCAGTGAGCTT 398
||||||||||||||||||||||||||||| ||||| || ||||| || ||| | || ||
Sbjct 360 TACGGAACAGATCGAGGTTTAAGCGCATCGAGCGAAACCAGAGCTGAAATCGGAGATCTA 419
Query 399 ATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCTAACG-AAGCTCTGTTTC-TCC 456
|||||||||||||||||||||||||||||||||||||| | || ||||||| |||| | |
Sbjct 420 ATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGA-CGGAAGCTCT-TTTCCTTC 477
Query 457 TCAACGGCAAATGGATTCTCGCGTACACGTCGTTCGTGAGTTTGTTCCCATTGCTCTCAC 516
|||||||||||||||| ||||| ||||| |||||||||| ||||||||| ||||| ||||
Sbjct 478 TCAACGGCAAATGGATCCTCGCCTACACATCGTTCGTGAATTTGTTCCCGTTGCTATCAC 537
Query 517 GAAGAATTGAACCGTTGGTTAAAGTGGATGAGATCTCACAGACCATTGATTCCGATAGCT 576
|| |||| | |||||| | ||||| ||||||||||| || ||||||||||| |||| ||
Sbjct 538 GAGGAATCGTACCGTTAATAAAAGTCGATGAGATCTCTCAAACCATTGATTCAGATAACT 597
Query 577 TCACCGTTCAAAATTCTGTTCGGTTT-GCTGGTCCATTTTCC-ACTA-CATCGTTTAGCA 633
||||||| || || |||||||| ||| |||||||| ||| || | | ||| ||||||
Sbjct 598 TCACCGTCCAGAACTCTGTTCG-TTTCGCTGGTCC-TTTAGGTACAAAC-TCGATTAGCA 654
Query 634 CTAACGCTAAGTTCGAAATCCGAAGTCCTAAACGCGTCCAGATTAAGTTCGAGCAAGGCG 693
| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 655 CCAACGCTAAATTCGAAATCCGAAGCCCTAAACGCGTCCAGATTAAGTTTGAGCAAGGCG 714
Query 694 TTATTGGGACTCCTCAGCTAACGGATTCGATTGAAATCCCTGAATCCGTGGAGGTTCTTG 753
| |||||||| ||||||||||||||||| ||||| || || |||| || ||||||||||
Sbjct 715 TAATTGGGACGCCTCAGCTAACGGATTCTATTGAGATACCGGAATATGTAGAGGTTCTTG 774
Query 754 GTCAGAAA-ATCGATCTCAACCCCATTAAAGGGTTACTTACATCGGTCCAAGACACGGCT 812
|||| ||| || ||||| ||||| || | |||||||||||| ||||| |||||||| ||
Sbjct 775 GTCA-AAAGATTGATCTTAACCCGATCAGAGGGTTACTTACCTCGGTGCAAGACACAGCC 833
Query 813 TCTTCAGTGGCTAGAACCATTTCAAACCAACCACCATT-AAAGTTTTCTCTGCCTAGTG- 870
|| || |||||||||||||| |||| ||||||||| || ||| || ||| |||| | |
Sbjct 834 TCGTCTGTGGCTAGAACCATATCAAGCCAACCACCGTTGAAA-TTCTCTTTGCCG-GCGG 891
Query 871 ATAACACACAGTCGTGGCTGCTCACGACTTATCTCGACAAAGACCTTAGGATCTCTAGAG 930
| || | ||||| ||||| |||||||||||||| ||||||||| || ||||||||||||
Sbjct 892 ACAATGCGCAGTCTTGGCTACTCACGACTTATCTAGACAAAGACATTCGGATCTCTAGAG 951
Query 931 GCGATGGCGGAAGCGTCTTTGTTCTCATCAAAGAAGGAAGCTCTCTCTTAAACCCTT 987
| || || ||||| |||||||| || ||||||||||||||| ||||||| || ||||
Sbjct 952 GAGACGGTGGAAGTGTCTTTGTGCTTATCAAAGAAGGAAGCCCTCTCTTGAATCCTT 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49430400648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5