BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943235 Length=1208 Score E Sequences producing significant alignments: (Bits) Value AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subuni... 1916 0.0 AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subuni... 250 2e-65 > AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit protein | chr4:2350498-2352018 REVERSE LENGTH=1521 Length=1521 Score = 1916 bits (1037), Expect = 0.0 Identities = 1154/1209 (95%), Gaps = 13/1209 (1%) Strand=Plus/Plus Query 1 GCAAAACACTGTCTGAAACAAACATC-AAAAAATGGCTTGCTCTAATCTAACTACAATGT 59 |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| Sbjct 105 GCAAAACACTGTCTGAAACAAACAACAAAAAAATGGCTTGCTCTAATCTAACAACAATGT 164 Query 60 GGGTTTCATCAAAACCATCTCTTTCTGCTGATTCATCTTCCTTATCTTTCCGATCTGTTC 119 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 165 GGGTTTCATCAAAACCATCTCTTTCTGCTGATTCATCTTCCTTATCATTCCGATCTGTTC 224 Query 120 TCAAGTGCCCAGTTCCTCTCCCAAATTACACTTCCTCTCCACCTTCAAGATCATCCTCTG 179 ||||||||||| || | |||||||||| || |||||| || | ||||||| Sbjct 225 TCAAGTGCCCA-----ACT-----A--ACACTTCCTCACCTCCTTCACGAGCTTCCTCTG 272 Query 180 TTTCACCACTCCAAGCGTCTCTTCGTGAGCTCAGAGACCGTATCGATTCAGTCAAAAACA 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 273 TTTCACCACTCCAAGCGTCTCTTCGTGAGCTCAGAGACCGTATCGATTCAGTCAAAAACA 332 Query 240 CTCAGAAGATCACCGAAGCTATGAAGCTTGTCGCTGCAGCTAAAGTCAGGAGAGCTCAAG 299 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 333 CTCAAAAGATCACCGAAGCTATGAAGCTTGTCGCTGCAGCTAAAGTCAGGAGAGCTCAAG 392 Query 300 AAGCTGTCGTCAATGGCCGACCTTTCTCAGAAACCCTAGTTGAAGTTCTTTACAACATCA 359 ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 393 AAGCTGTTGTCAATGGACGACCATTCTCAGAAACCCTAGTTGAAGTTCTTTACAACATCA 452 Query 360 ACGAACAGCTTCAAACCGATGATGTCGATGTCCCCTTAACCAAAGTCAGACCGGTTAAGA 419 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 453 ACGAACAGCTTCAAACCGATGATGTCGATGTTCCCTTAACCAAAGTCAGACCGGTTAAGA 512 Query 420 AAGTAGCACTCGTTGTCGTAACCGGTGATCGTGGATTATGTGGTGGATTCAACAATTTCA 479 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 513 AAGTAGCTCTCGTTGTCGTCACCGGTGATCGTGGATTATGTGGTGGATTCAACAATTTCA 572 Query 480 TCATCAAGAAAGCAGAGGCAAGAATCAAAGAGCTTAAAGGTCTTGGTCTTGATTACACAG 539 |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 573 TCATTAAGAAAGCAGAGGCAAGAATCAAAGAGCTTAAAGGTCTAGGTCTTGAATACACAG 632 Query 540 TCATTAGCGTGGGGAAGAAGGGAAATTCTTATTTCCTCCGTCGTCCGTACATACCCGTCG 599 ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 633 TCATTAGCGTGGGCAAGAAGGGAAATTCTTATTTCCTCCGTCGCCCGTACATCCCCGTCG 692 Query 600 ACAGATACCTCGAAGCCGGAACTTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATG 659 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 ACAAATACCTAGAAGCCGGAACTTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATG 752 Query 660 ATGTCTTCTCTCTGTTTATAAGCGAAGAAGTCGATAAAGTCGAGCTCTTGTACACAAAGT 719 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 753 ATGTCTTCTCTCTGTTTATAAGTGAAGAAGTCGACAAAGTCGAGCTCTTGTACACAAAGT 812 Query 720 TTGTGTCTTTGGTCAAATCAGAACCCGTGATCCACACGCTATTGCCTCTATCACCTAAAG 779 |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 813 TTGTCTCTTTGGTCAAATCAGAACCCGTGATCCACACGCTACTGCCTTTATCACCTAAAG 872 Query 780 GAGAGATCTGTGACATTAATGGGACCTGTGTTGATGCTGCGGAAGATGAATTGTTCAGGC 839 |||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||| Sbjct 873 GAGAGATCTGTGACATTAATGGAACCTGTGTGGATGCTGCGGAAGATGAGTTTTTCAGGT 932 Query 840 TAACGACGAAAGGAGGGAAATTGACGGTTGAAAGAGAGACTTTTAGGACACCAACAGCTG 899 ||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 933 TAACGACAAAAGAAGGGAAATTGACAGTTGAAAGAGAGACTTTTAGGACACCAACAGCTG 992 Query 900 ATTTCTCGCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGC 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 993 ATTTCTCGCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGC 1052 Query 960 CTCTGTATCTGAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTG 1019 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 CTCTGTATCTTAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTG 1112 Query 1020 CAGCTAGAATGAGTGCAATGAGTAGTGCTTCGGATAATGCATCGGATCTTAAGAAATCGC 1079 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1113 CAGCTAGAATGAGTGCAATGAGTAGTGCTTCGGATAATGCATCGGATCTCAAGAAATCGC 1172 Query 1080 TTTCCATGGTGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATTCTTGAGATTG 1139 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1173 TTTCGATGGTGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATTCTTGAGATTG 1232 Query 1140 TTGCTGGAGCTAATGCACAGGTTTGATTTGTTTTCAACCCTCTTTGAATCTTTTATATGA 1199 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1233 TTGCTGGAGCTAATGCACAGGTTTGATTTGTTTTGAACCCTCTTTGAATCTTCTATATGA 1292 Query 1200 GTCCAAAAC 1208 ||||||||| Sbjct 1293 GTCCAAAAC 1301 > AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subunit protein | chr1:5402569-5403818 REVERSE LENGTH=1250 Length=1250 Score = 250 bits (135), Expect = 2e-65 Identities = 418/549 (76%), Gaps = 42/549 (8%) Strand=Plus/Plus Query 622 TTTACCTACGGCTAAAGAAGCTCAAGCTGTGGCTGATGATGTCTTCT-CTCTGTTTATAA 680 ||| || ||| ||||||||||||||| | | || |||||||| || | || ||||| | | Sbjct 641 TTTCCCAACGACTAAAGAAGCTCAAGTTATTGCAGATGATGTGTTTTCCT-TGTTTGTCA 699 Query 681 GCGAAGAAGTCGATAAAGTCGAGC-TCTTGTACACAAAGTTTGTGTCTTTGGTCAAATCA 739 | ||||| || |||||||| |||| | || ||||||||||||||||||||||| ||||| Sbjct 700 GTGAAGAGGTTGATAAAGTTGAGCTTGTT-TACACAAAGTTTGTGTCTTTGGTGAAATCT 758 Query 740 GAACCCGTGATCCACACGCTATTGCCTCTATCACCT-AAAGGAGAGATC-TGTGACATTA 797 || || ||||||||||| || |||||| | || | ||||||||| || ||||| | | Sbjct 759 GATCCTGTGATCCACACTCTGTTGCCTTTGTC-GATGAAAGGAGAG-TCTTGTGATGTGA 816 Query 798 ATGG-GACCTGTGTTGATGCT-GCGGAAGATGA-ATTGTTCAGGCTAACGACG-AAAGGA 853 | || || |||||||||||| | || ||||| | |||| |||||||||| | ||| || Sbjct 817 AAGGTGA-GTGTGTTGATGCTATC-GAGGATGAGA-TGTTTAGGCTAACGA-GCAAA-GA 871 Query 854 -GGGAAATTGA-CGGTTGAAA-GA--GAGACTTTTAG--GACACCAACAGCTGATTTCTC 906 ||||| || | | || |||| || || ||| || || | | | |||| |||| Sbjct 872 TGGGAAGTT-AGCTGTGGAAAGGACCAAG-CTTGAAGTTGAGA--AGC--CTGAGATCTC 925 Query 907 GCCGATCTTGCAATTCGAGCAAGACCCTGTTCAGATTCTTGATGCTTTGTTGCCTCTGTA 966 ||| | |||| || ||||||||||||||||||||||||||||| || ||||| |||| Sbjct 926 ACCGTTGATGCAGTTTGAGCAAGACCCTGTTCAGATTCTTGATGCAATGATGCCTTTGTA 985 Query 967 TCTGAACAGTCAGATTCTTAGGGCATTACAGGAGTCATTGGCTAGTGAGCTTGCAG-CTA 1025 ||| |||||||||||||| || ||| | ||||| || || || ||||||||||| | | | Sbjct 986 TCTCAACAGTCAGATTCTAAGAGCACTGCAGGAATCTTTAGCGAGTGAGCTTGC-GTCGA 1044 Query 1026 GAATGAGTGCAATGAGTAGTGCTTCGGATAATGCA-TCGGATCTTAAGAA-A-TCGCTTT 1082 | |||| ||| ||||||| ||| | |||||||| | | || | ||||| | || | Sbjct 1045 GGATGAATGCGATGAGTAATGCGACTGATAATGCGGTTGAAT-TGAAGAAGAATC--TGA 1101 Query 1083 CCATGG-TGTATAATAGAAAGCGTCAAGCTAAGATTACTGGAGAGATT-CTTGAGATTGT 1140 | |||| | ||||| || | | || |||||||| ||||| ||| || || |||||||| Sbjct 1102 CGATGGCT-TATAACCGAGCGAGACAGGCTAAGATCACTGGGGAG-TTGCTGGAGATTGT 1159 Query 1141 TGCTGGAGC 1149 |||||||| Sbjct 1160 GGCTGGAGC 1168 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59337044190 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5