BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943249
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04770.1 | Symbols: ATABC1, LAF6, ATNAP1, ABC1 | ATP binding... 2606 0.0
AT5G44316.1 | Symbols: | Stabilizer of iron transporter SufD s... 881 0.0
> AT4G04770.1 | Symbols: ATABC1, LAF6, ATNAP1, ABC1 | ATP binding
cassette protein 1 | chr4:2427799-2429850 REVERSE LENGTH=1938
Length=1938
Score = 2606 bits (1411), Expect = 0.0
Identities = 1623/1724 (94%), Gaps = 20/1724 (1%)
Strand=Plus/Plus
Query 1 TCCTTAGAG-C-CA-CAACAACAATGGCGTCTCTTCTCGCAAACGGTATCTCCAGCTTCT 57
|||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 TCCTAAGAGCCACACCAACAACAATGGCGTCTCTTCTCGCAAACGGTATCTCCAGCTTCT 102
Query 58 CTCCACAACCCACTTCCGATTCTTCAAAATCACCAAAAGGGTTTCACCCAAAACCCGAAT 117
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 103 CTCCACAACCCACTTCCGATTCCTCAAAATCACCAAAAGGGTTTCACCCAAAACCCGAAT 162
Query 118 CCTTGAAATTCCCATCTCCCAAATCCCTAAATCCGACGAGACCCATTTTCAAAGTCAGAG 177
|||| ||||||||||||||||||||||||||||| |||||||| || |||||| |||||
Sbjct 163 CCTTAAAATTCCCATCTCCCAAATCCCTAAATCCAACGAGACCGATCTTCAAACTCAGA- 221
Query 178 CCGCCGATGTTGTTGGAATCGATTCTCGTCCCATCGGAG---CTG----A--ATCATCAG 228
||||| ||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 222 --GCCGA---TGTTGGAATCGATTCTCGTCCCATCGGAGCTTCTGAATCATCATCATCAG 276
Query 229 GTACATCAACTGTTAGTTCCACTGATAAACTTCAACAGTATTTCCAGAATCTTGATTACG 288
|||||||||| ||||| || |||||||||||||||||||||||||| ||||| |||||||
Sbjct 277 GTACATCAACCGTTAGCTCAACTGATAAACTTCAACAGTATTTCCAAAATCTCGATTACG 336
Query 289 ATAAGAAATACGGATTCGTTGAAGATATCGATTCCTTCACAATCCCTAAAGGTTTATCTG 348
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ATAAGAAGTACGGATTCGTTGAAGATATCGATTCCTTCACAATCCCTAAAGGTTTATCTG 396
Query 349 AAGAAACGATTCGTTTGATTTCGAAACTGAAAGAAGAACCAGATTGGATGCTTGAGTTTA 408
|||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 397 AAGAGACGATTCGTTTGATTTCGAAATTGAAAGAGGAACCAGATTGGATGCTTGAGTTTA 456
Query 409 GGTTCAAAGCTTATGCTAAGTTTTTGAAGTTAGAAGAACCTAAATGGTCAGATAATAGAT 468
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 457 GGTTCAAAGCTTATGCTAAGTTTCTGAAACTAGAAGAACCTAAATGGTCAGATAATAGAT 516
Query 469 ATCCTTCGATTAATTTCCAGGATATGTGTTATTACTCTGCTCCTAAAAAGAAACCAACTT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 ATCCTTCGATTAATTTCCAGGATATGTGTTATTACTCTGCTCCTAAAAAGAAACCAACTT 576
Query 529 TGAATAGTTTAGATGAAGCTGATCCTCAGCTTCTTGAGTATTTCGATAAGTTAGGTGTTC 588
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 577 TGAATAGTTTAGATGAAGTTGATCCTCAGCTTCTTGAGTATTTCGATAAGTTAGGTGTTC 636
Query 589 CTTTAACAGAGCAGAAACGTTTGGCTAATGTTGCCGTTGATGCGGTTCTCGATAGTGTTT 648
||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 637 CTTTAACAGAGCAGAAACGTTTGGCTAATGTCGCGGTTGATGCGGTTATCGATAGTGTTT 696
Query 649 CGATAGCTACTACTCATAGGAAGACTCTAGAGAAGTCCGGTGTGATCTTCTGTTCGATAT 708
|||| ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 697 CGATTGCTACTACTCATAGGAAGACTTTAGAGAAGTCTGGTGTTATCTTCTGTTCGATAT 756
Query 709 CGGAAGCTATTAGGGAGTACCCGGATTTGATTAAGAAGTATTTAGGAAGAGTTGTGCCTA 768
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 757 CTGAAGCTATTAGGGAGTATCCGGATTTGATTAAGAAGTATTTAGGTAGAGTTGTGCCTA 816
Query 769 GTGATGATAATTACTACGCAT-CTTTGAATTCTGCGGTTTTCAGCGATGGGTCTTTCTGT 827
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 817 GTGATGATAATTACTACGC-TGCTTTGAACTCTGCGGTTTTCAGCGATGGGTCTTTCTGT 875
Query 828 TATATACCGAAGAACACTAGATGCCCGATGCCTATTTCGACTTATTTCCGGATTAACGCG 887
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 876 TATATACCGAAGAACACTAGATGTCCGATGCCTATTTCGACTTATTTCCGGATTAACGCG 935
Query 888 ATGGAGACTGGTCAGTTCGAGAGGACTTTGATTGTTGCAGAGGAAGGGAGTTTTGTTGAG 947
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 936 ATGGAGACTGGTCAGTTCGAGAGGACTTTGATTGTTGCTGAGGAAGGGAGTTTTGTTGAG 995
Query 948 TATTTAGAAGGGTGTACTGCTCCTTCTTATGACACGAATCAGCTTCACGCTGCTGTTGTT 1007
||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 996 TATTTAGAAGGATGTACTGCTCCTTCTTATGATACGAATCAGCTTCATGCTGCTGTGGTT 1055
Query 1008 GAGCTCTATTGCGGGAAAGGAGCTGAGATCAAGTACTCTACGGTGCAGAATTGGTATGCA 1067
||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1056 GAGCTCTATTGTGGGAAAGGAGCTGAGATTAAGTACTCCACGGTGCAGAATTGGTATGCT 1115
Query 1068 GGGGATGAACAAGGTAAAGGCGGGATTTACAATTTTGTCACCAAGCGTGGTCTTTGTGCC 1127
|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 1116 GGGGATGAACAAGGTAAAGGTGGGATTTATAATTTTGTCACAAAGCGTGGTCTTTGCGCT 1175
Query 1128 GGGGATCGCTCCAAAATCTCATGGACTCAGGTTGAGACAGGGTCTGCAATAACTTGGAAG 1187
|||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1176 GGGGATCGTTCCAAGATCTCGTGGACTCAGGTTGAGACAGGGTCTGCGATAACTTGGAAG 1235
Query 1188 TATCCAAGCGTGGTTTTAGAAGGCGATGATTCAGTTGGCGAGTTTTACTCGGTTGCTTTG 1247
|| || |||||||||||||||||||||||||| ||||||||||||||||| || || |||
Sbjct 1236 TACCCGAGCGTGGTTTTAGAAGGCGATGATTCTGTTGGCGAGTTTTACTCCGTGGCATTG 1295
Query 1248 ACTAATAACTATCAGCAAGCTGATACAGGGACCAAGATGATTCACAAAGGAAAGAATACA 1307
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1296 ACTAATAACTATCAGCAAGCTGATACAGGGACTAAGATGATTCACAAAGGAAAGAATACC 1355
Query 1308 AAAAGCAGGATCATTTCAAAGGGAATTTCAGCTGGGCATTCGAGAAATTGTTACCGTGGT 1367
||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1356 AAAAGTAGAATCATTTCAAAGGGAATTTCGGCCGGGCATTCGAGAAATTGTTACCGTGGT 1415
Query 1368 CTTGTTCAGGTTCAATCCAAAGCTGAGAATGCTAAAAATACATCGACTTGCGATTCAATG 1427
||||||||||| || |||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 1416 CTTGTTCAGGTGCAGTCCAAAGCTGAGGGTGCTAAAAATACTTCGACTTGCGACTCAATG 1475
Query 1428 CTTATCGGTGACAAAGCAGCTGCTAATACCTATCCTTACATCCAGGTAAAGAATCCATCG 1487
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1476 CTTATCGGAGACAAAGCAGCTGCAAATACCTATCCTTACATCCAGGTAAAGAATCCATCG 1535
Query 1488 GCGAAAGTAGAGCACGAAGCGAGTACCTCAAAGATTGGAGAAGACCAGCTTTTCTATTTC 1547
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1536 GCGAAAGTAGAGCACGAAGCGAGTACCTCTAAGATTGGAGAAGATCAGCTATTCTATTTC 1595
Query 1548 CAGCAGAGAGGAATAGATCACGAGAGAGCATTAGCAGCGATGATCTCTGGTTTCTGCAGA 1607
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1596 CAGCAGAGAGGAATCGATCACGAGAGAGCATTAGCGGCAATGATCTCTGGTTTCTGCAGA 1655
Query 1608 GATGTCTTCAACAAGTTACCTGATGAATTTGGAGCTGAAGTTAACCAGCTTATGAGCATC 1667
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1656 GATGTTTTCAACAAGTTACCTGATGAGTTTGGAGCTGAAGTTAACCAGCTTATGAGCATC 1715
Query 1668 AAGCTTGAAGGATCAGTGGGTTAATACAAAACTCACCATTACAG 1711
|||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1716 AAGCTTGAAGGATCAGTGGGTTAAAACAAAACTCATAATTACAG 1759
> AT5G44316.1 | Symbols: | Stabilizer of iron transporter SufD
superfamily protein | chr5:17852911-17854521 FORWARD LENGTH=1413
Length=1413
Score = 881 bits (477), Expect = 0.0
Identities = 719/832 (86%), Gaps = 32/832 (4%)
Strand=Plus/Plus
Query 247 CCA-CTGATAAACTTCAACAGTATTTCCAGAATCTTGATTACGATAAGAAATACGGATTC 305
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 172 CCATCTGATAAACTTCAACAGTATTTCCAGAATCAAGATTACGATAAGAAATACGGATTC 231
Query 306 GTTGAAGATATCGATTCCTTCACAATCCCTAAAGGTTTATCTGAAGAAACGATTCGTTTG 365
||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 232 CTTGAAAACATCGATTCCTTCACAATCCCTAAAGGTTTATCTGAAGAAACGATTCGCTTG 291
Query 366 ATTTCGAAACTGAAAGAA-GAACCAGATTGGATGCTTGAGTTTAGGTTCAAAGCTTATGC 424
|| ||||| ||||| || ||||||| |||||| ||||||| |||| |||||||||||||
Sbjct 292 ATATCGAAGTTGAAA-AAGGAACCAGCTTGGATTCTTGAGTATAGGCTCAAAGCTTATGC 350
Query 425 TAAGTTTTTGAAGTTAGAAGAACCTAAATGGTCAGATAATAGATATCCTTCGATTAATTT 484
||||||| | || ||||||||||||||||||||||||||||| || |||| | || || |
Sbjct 351 TAAGTTTCTAAAATTAGAAGAACCTAAATGGTCAGATAATAGGTACCCTTTGCTTGATCT 410
Query 485 CCAGGATATGTGTTATTACTCTGCTCCTAAAAAGAAACCAACTTTGAATAG-T----T-T 538
||| |||||||||| |||||||||||||||||||||||||||||||||||| | | |
Sbjct 411 CCAAGATATGTGTTTTTACTCTGCTCCTAAAAAGAAACCAACTTTGAATAGTTCAGATAT 470
Query 539 A---GATGAAGC---TGATCCTCAGCTTCTTGA-GTATTTCGATAAG-TTAGGTGTTCCT 590
| |||||||| ||||||| |||||||||| | |||| ||| || |||| |||||||
Sbjct 471 AGCTGATGAAGCTGATGATCCTAAGCTTCTTGAGGAATTT-GAT-AGATTAGATGTTCCT 528
Query 591 TTAAC--AG-AGCAGAAACGTTTGGCTAATGTTGCCGTTGATGCGG-TTCTCGATAGTGT 646
||||| || || ||||| ||| |||| ||||| |||||||||| || | ||||||
Sbjct 529 TTAACAAAGAAGAAGAAATGTTCACCTAAAGTTGCGGTTGATGCGGTTTAT-AATAGTGA 587
Query 647 TTCGATAGCTACTACTCAT-AGGAAGACTCTAGAGAAGTCCGGTGTGATCTTCTGTTCGA 705
|||||||||| |||| || ||| || ||||||||||||| |||||||||||||||||||
Sbjct 588 ATCGATAGCTATTACTAATAAGG-AGCCTCTAGAGAAGTCAGGTGTGATCTTCTGTTCGA 646
Query 706 TATCGGAAGCTATTAGGGAGTACCCGGATTTGATTAAGAAGTATTTAGGAAGAGTTGTGC 765
|||| |||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct 647 TATCCGAAGCTATAAGGAAGTATCCGGATTTGATCAAGAAGTATTTAGGAAGAGTTGTGC 706
Query 766 CTAGTGATGATAATTACTACGCATCTTTGAATTCTGCGGTTTTCAGCGATGGGTCTTTCT 825
||||||||||||| |||||||| |||||||| | ||||||||||||||||| || ||||
Sbjct 707 CTAGTGATGATAACTACTACGCGGCTTTGAATACCGCGGTTTTCAGCGATGGATCGTTCT 766
Query 826 GTTATATACCGAAGAACACTAGATGCCCGATGCCTATTTCGACTTATTTCCGGATTAACG 885
||||||||||||| ||||||||||| ||||||||| |||||| |||||| ||||| ||
Sbjct 767 GTTATATACCGAAAAACACTAGATGTCCGATGCCTCTTTCGAGTTATTTTCGGATGAATT 826
Query 886 CGA-TG--GAGACTGGTCAGTTCGAGAGGACTTTGATTGTTGCAGAGGAAGGGAGTTTTG 942
| | || | ||||||||||| || || |||||||||||||| |||||||| |||||||
Sbjct 827 CTATTGAAAACACTGGTCAGTTTGAAAGAACTTTGATTGTTGCTGAGGAAGGTAGTTTTG 886
Query 943 TTGAGTATTTAGAAGGGTGTACTGCTCCTTCTTATGACACGAATCAGCTTCACGCTGCTG 1002
||||||||| |||||| || |||||| |||| |||||| ||||||||||||||||||||
Sbjct 887 TTGAGTATTCAGAAGGATGCACTGCTATTTCTCATGACAAGAATCAGCTTCACGCTGCTG 946
Query 1003 TTGTTGAGCTCTATTGCGG-GAAAGGAGCTGAGATCAAGTACTCTACG-GTG 1052
|||||||||||||||||| ||| ||||| ||||| |||||||| ||| |||
Sbjct 947 TTGTTGAGCTCTATTGCGCTGAA-GGAGCGGAGATTAAGTACTCGACGCGTG 997
Score = 139 bits (75), Expect = 8e-32
Identities = 102/115 (89%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 1112 GCGTGGTCTTTGTGCCGGGGATCGCTCCAAAATCTCATGGACTCAGGTTGAGACAGGG-T 1170
||||||||| || || || ||||| ||||| |||||||||||||| ||||||| |||| |
Sbjct 993 GCGTGGTCTCTGCGCTGGTGATCGTTCCAAGATCTCATGGACTCAAGTTGAGAAAGGGTT 1052
Query 1171 CTGCAATAACTTGGAAGTATCCAAGCGTGGTTTTAGAAGGCGATGATTCAGTTGG 1225
| || ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1053 C-GCGATAACTTGGAAGTATCCAAGCGTGGTTTTAGAAGGAGATGATTCCGTTGG 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84587918325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5