BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943375
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03400.1 | Symbols: DFL2, GH3-10 | Auxin-responsive GH3 fami... 2909 0.0
> AT4G03400.1 | Symbols: DFL2, GH3-10 | Auxin-responsive GH3 family
protein | chr4:1497536-1499865 REVERSE LENGTH=2051
Length=2051
Score = 2909 bits (1575), Expect = 0.0
Identities = 1736/1816 (96%), Gaps = 1/1816 (0%)
Strand=Plus/Plus
Query 3 CTTAAAAGGCTT-GTATTGGATGGAAACTGTAGAAGCTGGGCATGATGATGTTATTGGTT 61
||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 117 CTTGAAAGACTTGGTATTGGATGGAAACTGTAGAAGCGGGGCATGATGATGTTATTGGTT 176
Query 62 GGTTTGAGCATGTATCGGAGAATGCCTGCAAGGTCCAAAGCGAGACTCTGCGCCGGATTC 121
|||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 177 GGTTCGAGCATGTGTCGGAAAATGCCTGCAAGGTCCAAAGCGAGACGCTACGAAGGATTC 236
Query 122 TTGGGCTCAACTCCGGAGTGGAGTATCTGAGGAAGTGGCTTGGGACTGTTGATGTAGAAA 181
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 TTGAGCTCAACTCCGGAGTGGAGTATCTGAGGAAATGGCTTGGGACTGTTGATGTAGAAA 296
Query 182 AGATGGACGATTATACCTTGGAAACTCTCTTTACTTCCTTGGTGCCTATTGTTTCACATG 241
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGATGGACGATTATACTTTGGAAACTCTCTTTACTTCCTTGGTGCCTATTGTTTCACATG 356
Query 242 CTGATTTAGATCCTTATATTCAAAGAATTGCAGATGGAGAGACTTCTCCATTACTCACAC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 357 CTGATTTAGATCCTTATATTCAAAGAATTGCAGATGGAGAGACTTCTCCATTACTTACAC 416
Query 302 AAGAACCCATCACTGTTCTGTCCCTCAGCTCTGGAACAACAGAAGGGAGACAAAAGTATG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAGAACCCATCACTGTTCTGTCCCTCAGCTCTGGAACAACAGAAGGGAGACAAAAGTATG 476
Query 362 TTCCATTTACTCGTCATAGCGCACAAACTACTCTTCAGATTTTTCGATTATCAGCGGCTT 421
|||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 477 TTCCGTTTACTCGCCATAGCGCGCAAACTACTCTTCAGATTTTCCGATTATCAGCGGCTT 536
Query 422 ACAGATCAAGGTATTATCCAATAAGGGAAGGAGGGAGGATTCTTGAGTTTATCTACGCCG 481
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 537 ACAGATCAAGGTTTTATCCAATAAGGGAAGGAGGGAGGATTCTTGAGTTTATATACGCCG 596
Query 482 GGAAAGAATTTAAGACGCTAGGAGGCTTGACAGTAGGAACGGCCACAACACATTACTATG 541
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 597 GGAAGGAATTTAAGACGCTAGGAGGATTGACAGTAGGAACGGCCACAACACATTACTATG 656
Query 542 CGAGCGAAGAGTTTAAAACTAAGCAAGAGACAACAAAGTCCTTCACTTGTAGCCCACAAG 601
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 657 CGAGCGAAGAGTTTAAAACTAAGCAAGAGACAACAAAATCCTTCACTTGTAGCCCACAAG 716
Query 602 AGGTCATCTCAGGAGGTGATTTCGGGCAGTGCACGTATTGTCATCTCCTACTTGGCCTCC 661
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 717 AGGTCATCTCAGGAGGTGATTTCGGTCAGTGCACGTATTGTCATCTCCTACTTGGTCTCC 776
Query 662 ATTACTCCAGCCAAGTAGAGTTCGTCGCCTCTGCTTTTTCTTACACTATTGTCCAAGCTT 721
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 777 ATTACTCCAGCCAAGTAGAGTTTGTCGCCTCTGCTTTTTCTTACACCATTGTCCAAGCTT 836
Query 722 TCTCCTTTTTCGAAGAAATCTGGAGAGAGATATGTGCTGACATCAAGGAAGGCAATATTA 781
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 837 TCTCCTTTTTCGAAGAAATCTGGAGAGAGATATGTGCTGACATCAAGGAAGGTAATCTTA 896
Query 782 GCTCAAGAATCACTCTGCCCAAGATGAGAAAAGCTGTATTGACTCTGATCAGACCAAACC 841
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 897 GCTCAAGAATCACTCTGCCCAAGATGAGAAAAGCTGTATTGGCTCTGATCAGACCAAACC 956
Query 842 CGTCTCTTGCTTCTCATATTGAAGAGGTCTGCACAGAGCTGGAATCAAATCTCGGATGGT 901
||||||||||||||||||| || ||| ||||| |||||||||| |||||||||||||||
Sbjct 957 CGTCTCTTGCTTCTCATATCGAGGAGATCTGCTTAGAGCTGGAAACAAATCTCGGATGGT 1016
Query 902 TAGGGTTGATTCCAAAGCTTTGGCCAAATGCAAAATTTATCTCCTCAATCATGACAGGTT 961
| || |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1017 TCGGTTTGATTTCAAAGCTTTGGCCAAATGCAAAATTTATCTCCTCAATCATGACGGGTT 1076
Query 962 CCATGCTGCCGTACCTTAATAAGCTGAGGCATTACGCTGGCGGTTTGCCTCTGGTGAGCG 1021
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1077 CTATGCTGCCGTACCTGAATAAGCTGAGGCATTACGCTGGCGGTTTGCCCCTGGTGAGCG 1136
Query 1022 CAGATTATGGGTCAACCGAGAGCTGGATCGGTGTGAACGTTGATCCTAATCTTCCCCCAG 1081
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1137 CAGATTACGGGTCAACCGAGAGCTGGATTGGTGTGAACGTTGATCCTCATCTTCCCCCAG 1196
Query 1082 AAGACGTGAGCTTTGCTGTGATTCCCACTTTTAGTTACTTCGAGTTTATACCACTTTACA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAGACGTGAGCTTTGCTGTGATTCCCACTTTTAGTTACTTCGAGTTTATACCACTTTACA 1256
Query 1142 GGCGGCAGAATCAATCAGACATATGCAGTGACGGTGACTTTGTCGAAGAGAAACCTGTGC 1201
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1257 GGCGGCAGAATCAATCAGACATATGCATTGACGGTGACTTTGTCGAAGATAAACCTGTGC 1316
Query 1202 CGCTCTCTCAAGTCAAACTCGGACAGGAGTATGAACTTGTTCTAACCACTTTCACAGGTC 1261
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1317 CGCTCTCTCAAGTCAAACTCGGGCAGGAGTATGAACTTGTTCTAACCACTTTCACAGGTC 1376
Query 1262 TTTATAGGTACAGATTAGGAGACGTTGTTGAAGTAACCGGTTTTCACAAAGGCACACCAA 1321
||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
Sbjct 1377 TTTATAGGTACAGATTAGGAGACGTAGTTGAAGTGACCAGTTTTCACAAAGGCACACCGA 1436
Query 1322 AGCTAAGTTTCATATACAGAAGAAAACTCATCTTAACCATCAACATTGACAAGAACACAG 1381
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1437 AGCTAAGTTTCATATACAGAAGAAAACTCATCTTAACCATCAACATTGACAAAAACACAG 1496
Query 1382 AGAAGGATCTTCAGAGAGTGGTTGATAAGGCGTCTCAGCTGCTGAGCCAAACCACGCGAG 1441
||||||||||||||||||| ||||| |||||||||||||| ||||||| | |||| ||||
Sbjct 1497 AGAAGGATCTTCAGAGAGTTGTTGACAAGGCGTCTCAGCTTCTGAGCCGATCCACACGAG 1556
Query 1442 CCGAAGTCGTTGACTTTACAAGCCACGCAGACGTTATAGCTCGTCCTGGTCACTATGTAA 1501
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CTGAAGTCGTTGACTTTACAAGCCACGCAGACGTTATAGCTCGTCCTGGTCACTATGTAA 1616
Query 1502 TCTACTGGGAAATCAGAGGAGAAGCAGAGGATAAGGCCCTTGAAGAATGTTGCAGAGAGA 1561
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1617 TCTACTGGGAAATCAGAGGAGAAGCAGATGATAAGGCTCTTGAAGAATGTTGCAGAGAGA 1676
Query 1562 TGGATACAGCTTTTGTGGACTATGGTTATGTTGTGTCGAGGCGCATGAACTCGATCGGAC 1621
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1677 TGGATACTGCTTTTGTGGACTATGGTTATGTAGTGTCGAGGCGCATGAACTCGATCGGAC 1736
Query 1622 CGCTCGAGCTGCGAGTAGTGGAACGAGGTACGTTTGGGAAAGTGGCGGAAAGGTGCGTTG 1681
|||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1737 CGCTTGAGCTACGAGTTGTGGAACGAGGAACGTTTGGGAAAGTGGCGGAAAGGTGCGTTG 1796
Query 1682 GGAAATGCGGTTGCTTGAACCAGTTTAAGACTCCTAGGTGTACGACCAATTCGGTTATGC 1741
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1797 GGAAATGCGGTGGCTTGAACCAGTTTAAGACTCCTAGGTGTACGACCAATTCTGTTATGC 1856
Query 1742 TTAACATACTTGATGATTCTACTATCAAGAGATTTCGCAGTTCGGCTTATGTCTAGAAGT 1801
|| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1857 TTGACATACTTAATGATTCTACTATCAAGAGATTTCGCAGTTCAGCTTATGACTAGAAAC 1916
Query 1802 CTGATTTCTGAATTTA 1817
|||||| || ||||||
Sbjct 1917 CTGATTACTAAATTTA 1932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89909176095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5