BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943396
Length=2482
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03200.1 | Symbols: | catalytics | chr4:1408159-1412756 FOR... 3751 0.0
> AT4G03200.1 | Symbols: | catalytics | chr4:1408159-1412756 FORWARD
LENGTH=2784
Length=2784
Score = 3751 bits (2031), Expect = 0.0
Identities = 2352/2505 (94%), Gaps = 29/2505 (1%)
Strand=Plus/Plus
Query 1 GTAATTCT-AAAAATCAATCAGCAATGGTGATGAAAAGTCTTCACTTGTTGTCTTCCACA 59
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 114 GTAATTCTAAAAAATCAATCAGCAATGCTGATGAAAAGTCTTCACTTGTTGTCTTCCTCA 173
Query 60 ATCCTCCTCCACCGCTTTGCGTCT-------TTG--TC--T-TCT--T-TACCCAGAAGA 104
|||||||||||||||||||| ||| ||| || | ||| | |||||||||||
Sbjct 174 ATCCTCCTCCACCGCTTTGCTTCTCGCAGCATTGCATCTTTGTCTACTCTACCCAGAAGA 233
Query 105 AGAATTATCGTCCGTATACGTAATCCTTCGTTTTCAAGCCCTTTCCCGCCGATTCTCTCT 164
|||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 234 AGAAATATCGTCCGTATACATAACCCTTCGTTTTCTAGCCCTTTCCCGCCGATTCTCTCT 293
Query 165 AGACCCATTTCCTCAGGCAAGGTCTTGGCCATGGCGGAAGA---ATCTTCTTCTTCGACC 221
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 294 AGACCCATTTCCTCAGGCAAGGTCTTAGCCATGGCGGAAGAGTCTTCTTCTTCTTCGACC 353
Query 222 TCGTCAACATCTCAGAAACATACCAACCGTTTAGCCGCCGAACACAGTCCTTATCTTCTT 281
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 354 TCGTCAACATCTCAGAAACATACCAACCGTTTAGCCGCTGAACACAGTCCTTATCTTCTT 413
Query 282 CAACACGCCCATAATCCGGTTGATTGGTATCCATGGGGAGAAGAAGCTTTTGAAGAAGCA 341
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 414 CAACACGCGCATAATCCGGTTGATTGGTACCCATGGGGAGAAGAAGCTTTTGAAGAAGCA 473
Query 342 AGGAAGAGAGATGTGCCCATCTTCTTATCAATTGGATACAGTACCTGTCACTGGTGCCAT 401
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AGGAAGAGAGACGTGCCCATCTTCTTATCAATTGGATACAGTACCTGTCACTGGTGCCAT 533
Query 402 GTCATGGAAGTTGAGTCATTTGAAGATGAACAAGTGGCAAAACTCTTAAACGATTCGTTC 461
|||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||
Sbjct 534 GTCATGGAAGTTGAGTCATTTGAAGATGAAGAAGTGGCAAAACTCTTGAACAATTCATTC 593
Query 462 GTTAGTATCAAGGTGGATCGAGAAGAGCGGCCTGATGTAGACAAGGTTTATATGTCGTTC 521
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 594 GTTAGTATCAAGGTTGATCGAGAAGAGCGGCCTGATGTCGACAAGGTTTATATGTCGTTC 653
Query 522 GTCCAGGCTCTATACGGTGGAGGAGGGTGGCCACTGTCAGTCTTCCTTTCACCTGATTTA 581
||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 654 GTCCAGGCTCTGTATGGTGGAGGAGGGTGGCCACTGTCGGTATTCCTTTCACCTGATTTA 713
Query 582 AAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGCCCAGGATTC 641
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 714 AAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGACCAGGATTC 773
Query 642 AAAACCCTCCTTAAGAAGGTGAAAGATGCGTGGGATAGTAAGAGGGATACTCTTGTGAAG 701
||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 774 AAAACTCTCCTTAAGAAGGTGAAAGATGCGTGGAACAGTAAGAGGGATACTCTAGTGAAG 833
Query 702 AGTGGTACATATGCTATTGAAGAACTGACAAAAGCTTTATCCGCAAGTGCTGGAGCCGAT 761
||||||||||||||||| |||||||| | ||||||||||| |||||| |||||||||||
Sbjct 834 AGTGGTACATATGCTATCGAAGAACTCTCTAAAGCTTTATCTGCAAGTACTGGAGCCGAT 893
Query 762 AAATTGTCAGATGGGATTTCTCGGGAGGCTGTGAGTATATGTGCAAAACAACTTTCTCGG 821
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 894 AAATTGTCAGATGGGATTTCTCGGGAGGCTGTGAGTACATGTGCAAAACAACTTTCTCGG 953
Query 822 AGCTATGATTCGGAATTCGGTGGGTTTGGATCTGCACCAAAGTTCCCGAGGCCCGTCGAG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 954 AGCTATGATTCGGAATTCGGTGGGTTTGGATCTGCACCAAAGTTCCCGAGGCCTGTCGAG 1013
Query 882 ATCCAGCTGATGCTTTATCATTTCAAAAAGTTGAAGGAATCGGGGAAAACTAGTGAGGCT 941
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1014 ATCCAGCTGATGCTTTATCATTACAAAAAGTTGAAGGAATCGGGGAAAACTAGTGAGGCT 1073
Query 942 GATGAAGACCAAAGTATGGTTTTATTCAGCTTGCAAGGCATGGCAAATGGAGGGATGCAT 1001
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GATGAAGAGAAAAGTATGGTTTTATTCAGCTTGCAAGGCATGGCAAATGGAGGGATGCAT 1133
Query 1002 GATCACATTGGAGGCGGGTTTCATAGATACAGTGTCGATGAATGTTGGCACGTTCCACAT 1061
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1134 GATCACATTGGAGGCGGGTTTCATAGATACAGTGTCGATGAATGTTGGCATGTTCCACAT 1193
Query 1062 TTCGAGAAAATGCTGTATGATCAAGGGCAACTAGCTAACGTCTACCTGGATGGTTTTATC 1121
|| ||||||||||||||||||||||||||||||||||| || ||||| || ||||||| |
Sbjct 1194 TTTGAGAAAATGCTGTATGATCAAGGGCAACTAGCTAATGTGTACCTCGACGGTTTTAGC 1253
Query 1122 ATAACCAAGGATGTTATGTATTCTTATGTGGCAAGAGACATCCTTGATTATCTTAGAAGA 1181
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ATTACCAAGGACGTTATGTATTCTTATGTGGCAAGAGACATCCTTGATTATCTTAGAAGA 1313
Query 1182 GACATGATTGCACCTGAAGGTGGAATATTCTCAGCTGAAGATGCCGATAGCTTTGAATTC 1241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1314 GACATGATTGCACCTGAAGGTGGAATATTCTCAGCTGAAGATGCCGATAGCTTTGAGTTC 1373
Query 1242 GAGGGGGCAAAGAGAAAGAAGGAAGGAGCTTTCTATATATGGAGCA-GCGTTGAGATTGA 1300
|||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||
Sbjct 1374 GAGGGGGCAAAGAGAAAGAAAGAAGGAGCTTTCTATATATGGA-CAAGCGATGAGATTGA 1432
Query 1301 TGAGGTTCTCGGGGAGAATGCAGATATTTTCAAGGAGCATTATTATGTTAAGAAATCAGG 1360
||| || |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1433 TGAAGTCCTCGGGGAGAATGCTGATCTTTTCAAGGAGCATTATTATGTTAAGAAATCAGG 1492
Query 1361 TAACTGTGATCTTTCGAGCAGGAGTGACCCGCACAATGAATTTGCTGGGAAAAACGTGCT 1420
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1493 TAACTGCGATCTTTCGAGCAGGAGTGACCCGCACAATGAATTTGCTGGGAAGAACGTGCT 1552
Query 1421 GATCGAAAGAAATGAG-CTGTCTGCCATGGCATCAAAATTTAGCCTCTCCGTTGAGAAGT 1479
|||||||||||||||| | |||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 1553 GATCGAAAGAAATGAGAC-GTCTGCTATGGCATCAAAGTTTAGCCTCTCTGTTGAGAAGT 1611
Query 1480 ATCAGGAGATTTTGGGTGAATGCCGAAGAAAGCTTTTCGATGTCAGATTGAAGCGACCTA 1539
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 ATCAGGAGATATTAGGTGAATGCCGAAGAAAGCTTTTCGATGTCAGATTGAAGCGACCTA 1671
Query 1540 AGCCACATCTAGATGATAAGATAATCGTGTCTTGGAACGGTCTTGTTATCTCGTCTTTCG 1599
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 AGCCGCATCTAGATGATAAGATAATCGTGTCTTGGAACGGTCTTGTTATCTCGTCTTTCG 1731
Query 1600 CAAGAGCTTCCAAGATTCTCAAGTCTGAGCCTGAAAGCACCAAATACTGTTTCCCTGTGG 1659
||||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||
Sbjct 1732 CAAGAGCTTCCAAGATTCTTAAGGCTGAGCCTGAAAGCACCAAATATTATTTCCCTGTGG 1791
Query 1660 TGAATAGTCAGCCAGAGGAATACATAGAAGTTGCAGAGAAAGCAGCTCTGTTTATCAGAG 1719
||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct 1792 TGAATAGTCAGCCAGAGGATTACATAGAGGTTGCAGAGAAAGCAGCTTTGTTTATCAGAG 1851
Query 1720 GGAATCTTTATGATGAGCAGTCTCGAAGATTACAACATAGTTATAGACAGGGACCATCCA 1779
| ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||
Sbjct 1852 GAAATCTCTATGATGAGCAGTCTCGCAGATTACAACACAGTTACAGACAGGGGCCATCCA 1911
Query 1780 AAGCTCCTGCCTTTTTAGACGATTATGCTTTCTTGATCGCTGGTTTGCTTGATCTCTACG 1839
||||||||||||| |||||||||||||||||||||||| ||||||| || ||||| ||||
Sbjct 1912 AAGCTCCTGCCTTCTTAGACGATTATGCTTTCTTGATCTCTGGTTTACTCGATCTTTACG 1971
Query 1840 AGAATGGAGGCGGGATCGAATGGCTTAAATGGGCGATTAAACTTCAAGAAACCCAGGATG 1899
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1972 AGAATGGAGGTGGGATCGAATGGCTTAAGTGGGCGATTAAACTTCAAGAAACACAGGATG 2031
Query 1900 AGTTATATCTGGACCGAGAAGGAGGAGCCTACTTCAACACCGAAGGACAAGACCCGTCGG 1959
|||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||
Sbjct 2032 AGTTATATCTGGACCGAGAAGGAGGAGCATACTTCAATACTGAAGGACAAGACCCATCGG 2091
Query 1960 TTCTTCTCCGTGTAAAAGAAGATCATGATGGTGCAGAACCTTCAGGGAACTCTGTTTCTG 2019
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 TTCTTCTTCGTGTAAAAGAAGATCATGATGGTGCAGAACCTTCAGGGAACTCTGTTTCTG 2151
Query 2020 CTATTAACCTTGTGAGATTAGCTTCCATAGTCGCTGGAGAAAAAGCCGACTCGTACCT-A 2078
|||| || |||||||| ||||||||||||||||| ||||||||||| || || ||||| |
Sbjct 2152 CTATCAATCTTGTGAGGTTAGCTTCCATAGTCGCCGGAGAAAAAGCTGAATCCTACCTCA 2211
Query 2079 TACACAGCACATCGTCTCCTGGCAGTCTTTGAGTTGAGGTTAAGAGAAATGGCGGTGGCA 2138
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2212 -ACACGGCACATCGTCTCCTGGCAGTCTTTGAGTTGAGGTTAAGAGAACTGGCGGTGGCT 2270
Query 2139 GTGCCATTAATGTGCTGCGCCGCAGACATGATATCTGTCCCGTCGAGGAAACAAGTTGTG 2198
|||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 2271 GTGCCATTAATGTGCTGCTCCGCAGATATGATCTCTGTTCCGTCGAGGAAACAAGTTGTA 2330
Query 2199 TTAGTTGGTTCTATGTCTTCTCCAGAGCTTAACAACATGCTTTCTGCTGCACATTCAGTC 2258
|| |||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||
Sbjct 2331 TTGGTTGGTTCTAAGTCTTCCCCAGAGCTTACCAACATGCTTTCTGCAGCACATTCAGTC 2390
Query 2259 TATGATCCTAATAAAACGGTGATTCACATAGATCCTTCGAATTCTGATGAGATGGAGTTT 2318
||||||||||||||||||||||||||||||||||| || | ||||||||| || ||||||
Sbjct 2391 TATGATCCTAATAAAACGGTGATTCACATAGATCCCTCTAGTTCTGATGAAATCGAGTTT 2450
Query 2319 TGGGAAGAGTATAACAGTAATGTAGCTGAGATGGCGAAAAAGAACAGAAACTCAGAGAAA 2378
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2451 TGGGAAGAGCATAACAGTAATGTAGCTGAGATGGCTAAGAAGAACAGAAACTCAGAGAAA 2510
Query 2379 GTGGTTGCTCTTGTGTGTCAACACTTCACTTGTAGTCCTCCTGTCGTTGACTCTTCTTCT 2438
||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2511 GTGGTGGCTCTTGTTTGTCAACACTTCACTTGCAGTCCTCCTGTCTTTGACTCTTCTTCT 2570
Query 2439 CTCACTCGCTTACTCTCCAAGTAAAAGCAA-GAG-ATTCCATGTT 2481
||||||||||| || |||||||||| ||| || ||||||||||
Sbjct 2571 CTCACTCGCTTGCTTTCCAAGTAAA--CAAAGATCATTCCATGTT 2613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123159845065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5