BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943398
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03180.1 | Symbols: | CONTAINS InterPro DOMAIN/s: rRNA proc... 843 0.0
> AT4G03180.1 | Symbols: | CONTAINS InterPro DOMAIN/s: rRNA processing
(InterPro:IPR013730); Has 898 Blast hits to 687 proteins
in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200;
Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes -
506 (source: NCBI BLink). | chr4:1403117-1404937 FORWARD LENGTH=1004
Length=1004
Score = 843 bits (456), Expect = 0.0
Identities = 528/563 (94%), Gaps = 3/563 (1%)
Strand=Plus/Plus
Query 12 CTCGCGACAATGAAGAAATTCTATCaaaaaaaTGAGCATGATACTGATAGATCCAAATCG 71
||||||| ||||||||||||||||||||| ||| ||||| ||||||| ||||||||||
Sbjct 164 CTCGCGATAATGAAGAAATTCTATCAAAATGCTGATCATGAGACTGATAAATCCAAATCG 223
Query 72 ACGGAGACGAAGAAGAGGAAGAACATGAAGAGATTGGGAGGCGGTGGTCTTTCTCTCCAA 131
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 224 GCGGAGACGAAGAAGAGGAAGAACATGAGGAGATTAGGAGGCGGTGGTCTTTCTCTCCAA 283
Query 132 ACTTTTGCCAACATGAAATCGGAAAACAATCGCTATAACCCTTCTTTGATCAAAAGGCAA 191
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 284 ACTTTTGCCAACATGAAATCGGAAAATAATCGCTATAACCCTTCTTTGATCAAAAAGCAA 343
Query 192 AAAGAGTTCTACAAGAATGCAAAGTATGTGAGCAAGTTTAGGAAGTCGGTGAAGCAGCAG 251
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 344 AAAGAGTTCTACAAGAATGCAAAGTATGTGAGCAAGTTTAGGAAGTCGTTGAAGCAGCAG 403
Query 252 AACATTGATGACAAGAATGAGACTGGAGAGAGTAGTAAGGTA---GATGATGACGATGAT 308
|||||| ||| ||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 404 AACATTCCTGATAAGAATGAGACTGGAGAGACTAGTAAGGTAGGTGATGATGATGATGAT 463
Query 309 GATAAGCAGAAGGGTAAATCTAATAAGAGAATTGGTGTAGAGGATTTGTACAAGCAGACA 368
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GATAAGCGGAAGGGTAAATCTAATAAGAGAATTGGTGTAGAGGATTTGTACAAGCAGACA 523
Query 369 AGAGAAGAGATGGAGAAAGTAAGGAAGGAGAGAGAGGCTACGTTTCAGGCGAAGAAGGAA 428
|||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 524 AGAGAAGAGATGGAGAGAGTAAGGAAGGAGAGAGAGGCAATGTTTCAGGCGAAGAAGGAA 583
Query 429 GCGAAAGAAGAGGCTGAATCCAGGAGGAAAGTAGCAAAGGGGAAAATGATGAGAAAGACT 488
|||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||
Sbjct 584 GCGAAAGAAGAGGCTGAATCTAGGAGGAAAGAAGCAAAGGGGAAAATGTTGAGGAAGACT 643
Query 489 CGACATGGTCAGCCTGTAATGAAATACAGAATAGAACATCTTCTTGAATCCATCAAGAAA 548
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 644 CGACATGGTCAGCCTGTAATGAAATACAGAATTGAGCATCTTCTTGAATCCATCAAGAAA 703
Query 549 TCTGCTGGAATCGACGGAAGCGC 571
||||| |||||| ||| || |||
Sbjct 704 TCTGCCGGAATCAACGAAATCGC 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28683697937
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5