BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943412
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03020.1 | Symbols: | transducin family protein / WD-40 rep... 2556 0.0
> AT4G03020.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr4:1331399-1335297 REVERSE LENGTH=2007
Length=2007
Score = 2556 bits (1384), Expect = 0.0
Identities = 1479/1526 (97%), Gaps = 2/1526 (0%)
Strand=Plus/Plus
Query 1 TCAATGGTGGTTATCTGCTATAATGTTTTTTGGACCAAGTGAGATTGATACTGACGAAAT 60
|||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 199 TCAATGGTTGTTATCTGCTATAATGTTTTTTGGACCAAGTGAGTTTGATGCTGATGAAAT 258
Query 61 GGGTTATGCAATGAGTAGACTTGAGATAGAATCCGATCTATGTGATACTGGAAAAGACTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 259 GGGTTATGCAATGAGTAGACTTGAGATAGAATCCGATCTATGTGATACTGGAAAAGACGT 318
Query 121 TTGTGGAGTTGGTAGTAGTAGTGCTAGTCACAGATCAAGTGAACATTTGGCTGATTTAGA 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 319 TTGTGGAGTTGGTAGTAGTAGTGGTAGTCACAGATCAAGTGAACATTTGGCTGATCTAGA 378
Query 181 CCATGAAATCAGCCAGGTTACTAAATTGAAATCTAGTCCTCATCAACGGTATAGCCGTGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CCATGAAATCAGCCAGGTTACTAAATTGAAATCTAGTCCTCATCAACGGTATAGCCGTGA 438
Query 241 AGTCCCTGGGAGACATCAGTTACCTGTGTCTACTGTGAGGATGTTGGCTGGTCGAGAAAG 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 439 AGTCCCTGGGAGACATCAGTTACCTGTGTCTACTGTGAGGATGTTGGCAGGTCGAGAAAG 498
Query 301 TAATTTCTCTGGAAGAGGAAGGTTTTCTGCCGCTGATTGTTGCCATATGTTAAGCAGATA 360
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 499 TAATTTCTCTGGAAGAGGAAGGTTTTCAGCCGCTGATTGTTGCCATATGCTAAGCAGATA 558
Query 361 TTTGCCTATAAAAGGTCCTTGGCTTGTAGATCAAATGGACAGCCGAGCATATGTCTCTCA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TTTGCCTACAAAAGGTCCTTGGCTTGTAGATCAAATGGACAGCCGAGCATATGTCTCTCA 618
Query 421 GTTTTCAACTGATGGTTCTCTCTTTATTGCGGGGTTTCAGGGTAGCCGTATTCGGATTTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GTTTTCAACTGATGGTTCTCTCTTTATTGCGGGGTTTCAGGGTAGCCGTATTCGGATTTA 678
Query 481 CAATGTAGAGAAGGGCTGGAAAGTTCAAAAGGATATTCTTGCTAAAAGCTTGCGTTGGAC 540
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 679 CAATGTAGAGAAGGGTTGGAAAGTTCAAAAGGATATTCTTGCAAAAAGCTTGCGTTGGAC 738
Query 541 TGTTACTGATACTTCTCTATCCCCTAATCAGCGAAATCTGGTTTACGCAAGCATGTCACC 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 739 TGTTACTGATACTTCTCTATCCCCTGATCAGCGAAATCTGGTTTACGCAAGCATGTCACC 798
Query 601 TATTGTTCACATTGTTGATGTTGGGTCCGGTACAGCTGAGTCTCATGCAAATGTTACGGA 660
|||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||
Sbjct 799 TATTGTTCACATTGTTGATGTTGGATCCGGTTCAACCGAGTCTCATGCAAATGTTACGGA 858
Query 661 GATCCATGATGGATTAGACTTCTCTTCTGATGAAGATGGAGGGTACTCTTTTGGAATATT 720
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GATCCATGATGGCTTAGACTTCTCTTCTGATGAAGATGGAGGGTACTCTTTTGGAATATT 918
Query 721 CTCTGTGAAATTTTCAACCGATGGACGAGACA-TTGTTGCTGGGAGCAGTGATGATTCCA 779
|||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||
Sbjct 919 CTCTGTGAAATTTTCAACAGATGGCCGAGA-AGTTGTTGCTGGGAGCAGTGATGATTCCA 977
Query 780 TCTATGTTTATGATCTCGAAGCAAATCGAGTTTCACTCCGGACTGTTGCACACACGTCTG 839
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TTTATGTTTATGACCTTGAAGCAAATCGAGTTTCACTCCGGACTGTTGCACACACGTCTG 1037
Query 840 ATGTAAATACTGTGTGCTTTGCTGATGAAAGTGGAAACCTGATTTTATCTGGAAGTGATG 899
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1038 ATGTAAATACTGTGTGCTTTGCTGATGAAAGTGGGAACCTGATTTTATCTGGAAGTGATG 1097
Query 900 ATAATCTCTGCAAGGTGTGGGATAGGCGTTGTTTCATTGGGAGAGATAAGCCAGCTGGTG 959
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ATAATCTCTGCAAAGTGTGGGATAGGCGTTGTTTCATTGGGAGAGATAAGCCAGCTGGTG 1157
Query 960 TTTTAGTGGGACATCTCGAGGGTGTTACTTTTATCGATAGCCGTGGTGATGGTCGCTATT 1019
||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 1158 TTTTAGTGGGACACCTCGAAGGTGTTACCTTTATCGATAGCCGTGGAGATGGTCGCTATT 1217
Query 1020 TCATATCAAATGGTAAAGACCAAACTATCAAATTGTGGGATATCAGAAAAATGTCCTCAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TCATATCAAATGGTAAAGACCAAACTATCAAATTGTGGGATATCAGAAAAATGTCCTCAA 1277
Query 1080 GCGCACCTGCAAGGCATGAGGTGCTAAGAAACTATGAATGGGATTACAGATGGATGGATT 1139
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1278 GCGCACCTGCAAGGCATGAGGTGCTAAGAAACTATGAATGGGACTACAGATGGATGGATT 1337
Query 1140 ATCCTACTGAAGCAAGAGATCTAAAGCACCCACTCGATCAGTCAGTGTCAACATATAAAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1338 ATCCTACTGAAGCAAGAGATCTAAAGCACCCACTCGATCAGTCAGTGTCGACATATAAAG 1397
Query 1200 GTCACTCAGTCTTGCGTACTCTCATCCGTTGTTACTTCTCTCCAGCACATAGTACTGGCC 1259
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1398 GTCACTCAGTTTTGCGTACTCTCATCCGTTGTTACTTCTCTCCAGCGCATAGTACTGGCC 1457
Query 1260 AAAAATACATCTACACAGGATCTAACGACAGTTCCGTCTACATATATGACCTGGTAAGTG 1319
|||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||
Sbjct 1458 AAAAGTACATCTACACAGGATCGAACGACAGTTCCGTCTACATATACGACTTGGTAAGTG 1517
Query 1320 GAGATAAAGTGGCAGTGCTAAAGCACCATAGCTCACCTGTAAGAGACTGTAATTGGCACC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GAGATAAAGTGGCAGTGCTAAAGCACCATAGCTCACCTGTAAGAGACTGTAATTGGCACC 1577
Query 1380 CGTATTACCCAACCCTTATAAGCTCTTCGTGGGACGGAGATCTTGTGAAATGGGAATTTC 1439
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1578 CATATTACCCAACGCTTATAAGCTCTTCGTGGGACGGAGATCTTGTGAAGTGGGAATTTC 1637
Query 1440 CAGGGAGCAGTGAGGCGCCGATTATGAGTAAGAAGAGGGTTCGAAGGAGACATTTCTACT 1499
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 CGGGGAGCGGTGAGGCGCCGATTATGAGTAAGAAGAGGGTTCGAAGGAGACATTTCTACT 1697
Query 1500 ACTGATGCATCTCTCTACAAATACAT 1525
|||||||| |||||||||| ||||||
Sbjct 1698 ACTGATGCGTCTCTCTACACATACAT 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75250616955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5