BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943421 Length=1291 Score E Sequences producing significant alignments: (Bits) Value AT4G02920.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 2017 0.0 > AT4G02920.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1292523-1294861 FORWARD LENGTH=1744 Length=1744 Score = 2017 bits (1092), Expect = 0.0 Identities = 1234/1302 (95%), Gaps = 12/1302 (1%) Strand=Plus/Plus Query 1 TTCATCTTCAACAAAC-AAAAATGATCAAGCTTTGCTTCATGACTTCTCATGGCTATTCA 59 |||| || |||||| | |||||||||||||||||||||||||||||||||||| |||||| Sbjct 273 TTCAGCTACAACAACCAAAAAATGATCAAGCTTTGCTTCATGACTTCTCATGGTTATTCA 332 Query 60 ATTCCTGGCCTTGGTCTTCCTCAAGACCTCTGTAACACCGAAATCATCAAGCAGAATAGC 119 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 333 ATCCCTGGCCTTGGTCTTCCTCAAGACCTCTGCAACACCGAAATCATCAAGCAGAATAGC 392 Query 120 CGGTCTCATCTGGTGAATCCCGGAGCAAGACAAGAGATCATACCTGCAAGCTCCTTCAAT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 393 CGGTCTCATCTGGTGAATCCCGGAGCAAGACAAGAGATCATACCTGCAAGCTCCTTCAAT 452 Query 180 CTGAATCCAGA-CT-T-GGAACCATGGAAACCTGTTTCTTCATTTAGCCAATTCGTGGAG 236 |||||| |||| || | ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 453 CTGAATACAGAACTCTTGGAACCATGGAAACCGGTTTCTTCATTTAGCCAATTCGTGGAG 512 Query 237 ATTGATTCAGCCATGATGAAACCTCTGCTCATGGATGTTCATGAGACGGCACCAGAATCG 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 513 ATTGATTCAGCCATGATGAAACCTCTGCTCATGGATGTTCATGAGACGGCACCAGAATCT 572 Query 297 CTGGTTTTAAGCTTTGGAATTGCTGATAAGTCTGCGAGACAAGAAAAGGTGATGGAGTTT 356 ||| |||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||| Sbjct 573 CTGATTTTGAGCTTTGGAATCGCTGATAAGTTTGCAAGACAAGAAAAGGTGATGGAGTTT 632 Query 357 CTTCTGTCTCAGTCAGAGGAGTTCAAGGAAAAAGGATTCAATATGTCTCTGTTAAATGAA 416 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 633 CTTCTGTCTCAGTCAGAGGAGTTCAAGGAAAAAGGATTCGATATGTCGCTGTTAAATGAA 692 Query 417 TTGATGGAATTAGAGGCTATGAAATCCAGTTCTCAGCTACGAGCATATGATACTTCCTCT 476 |||||||| || ||| |||||||||||||||||||||||||| | ||||||||||||||| Sbjct 693 TTGATGGAGTTTGAGTCTATGAAATCCAGTTCTCAGCTACGACCGTATGATACTTCCTCT 752 Query 477 GTTCTTTACTTGAATCAAGAATTAGGGAAACCGGTTTTGGATCTCGTTGGGGATATGATG 536 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 753 GTTCTTTACTTGAATCAAGAATTAGGGAAACCGGTTTTGGATCTCGTTAGGGATATGATG 812 Query 537 GATAATCCAGAGCTCTCTGTGCGATCGAATGGTCACGTTCTGTTCTCTTCAAGTAGCAAT 596 || ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 813 GAGAATCCAGAGTTCTCTGTGCGATCGAATGGTCATGTTCTGTTCTCTTCAAGTAGCAAT 872 Query 597 TGTGAGTTGAATGATCTACTTTCTATTGCTTCCGAGTTCAATTTGTCAAGGAATTCAACA 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 873 CCTGAGTTGAATGATCTACTTTCTATTGCTTCCGAGTTCAATTTGTCAAGGAATTCAACA 932 Query 657 A-AA--TGGAGACAGCTCTCACCGCTTATCCCACACTTTCAGAGGTTTGAAAGTGAAGTA 713 | || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 933 ACAAAATGGAGACAGCTCTCACCGCTTATCCCACACTTTCAGAGGTTTGAAAGTGACGTA 992 Query 714 TTAACACCAGCTAAGCTGAAAGCAGTTACAGT---AGCACCTTTGAAGAGTCCTGAGAAA 770 || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 993 TTTACACCGGCTAAGCTGAAAGCAGTTACAGTGCTAGCACCTTTGAAGAGTCCTGAGAAA 1052 Query 771 ACCAGGCTCAAGTCACCAAGGAAACACAACACGAAGCAAAAAGCCAAAGAGAGGGACCTA 830 | ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1053 AGCAGGCTCAAGTCACCAAGGAAACACAACACGAAGCGAAAAGCTAAAGAGAGGGACCTA 1112 Query 831 TACAAAAGAAACCATCTCCACGCTTACGAGAGCCTTCTGTCTTTAATGATAGGCAATGAT 890 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1113 TACAAAAGAAATCATCTCCACGCTTACGAGAGCCTTCTCTCTTTAATGATAGGCAATGAT 1172 Query 891 CATCAACACAAACACACAACAGTACTCTCTTTACAGAAATCATGTGGAGAGCTCTCAGAG 950 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1173 CATCGACACAAACACACAACAGTACTCTCTTTACAGAAATCATGTGGAGAGCTCTCAGAG 1232 Query 951 CTTCTGACTCAGTTCTCTGTCACTGTTGCTGGAACTGGAATCGCTGTGCT-TTTCTCTGT 1009 |||||||||||||||||| |||||| |||||||||||||||||||||||| ||| ||||| Sbjct 1233 CTTCTGACTCAGTTCTCTATCACTGCTGCTGGAACTGGAATCGCTGTGCTCTTT-TCTGT 1291 Query 1010 CGTCTGTAGCCTTGCTTCAAGGCGTGTACCCTTTTGCGCAAACAAGTTCTTTGACACTGG 1069 ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1292 CGTATGTAGCCTTGCTTCAAGGCGTGTACCCTTTTGCGCAAATAAGTTCTTCGACACTGG 1351 Query 1070 GCTTGGTTTGAGTTTGGTAATACTGTCTTGGGCTGTGAATAGACTCAGGGAAGTGATTGT 1129 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1352 GCTTGGTTTGAGTTTGGTAATACTGTCATGGGCTGTGAATAGACTCAGGGAGGTGATTGT 1411 Query 1130 TCATGTCAATAGGAAAGCGAACAAACCCTGTTCAAGTTTGAAGGATGACGAAATCATAAA 1189 |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 1412 TCATGTCAATAGGAAAGCGAACAAGCCATGTTCAAGTTTGAAAGATGACGAAATCATAAA 1471 Query 1190 CAGTGTGGAGAAAAGTATCAAGGAGGTTTACTACAGAGCTGCCACTGTACTCGCGGTGTT 1249 ||||||||||| |||||| ||||||||||||||||||||||| || ||| |||||||||| Sbjct 1472 CAGTGTGGAGAGAAGTATGAAGGAGGTTTACTACAGAGCTGCAACGGTAATCGCGGTGTT 1531 Query 1250 TGCACTTAGGTTTGCATGTTGAGAACTCACGGTGAGAGGTAA 1291 ||| |||||||||||||||||| || || |||||||||||| Sbjct 1532 TGCGCTTAGGTTTGCATGTTGAAAAATCGGGGTGAGAGGTAA 1573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63503689425 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5