BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943474
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02530.1 | Symbols: | chloroplast thylakoid lumen protein |... 1094 0.0
> AT4G02530.1 | Symbols: | chloroplast thylakoid lumen protein
| chr4:1112141-1114029 REVERSE LENGTH=869
Length=869
Score = 1094 bits (592), Expect = 0.0
Identities = 654/684 (96%), Gaps = 4/684 (1%)
Strand=Plus/Plus
Query 11 AGAGAAGCAAAAATGGCGAAATCACTCCTTTGTTCATCAACCTTAAACCCTTTCTTCTCC 70
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AGAGAAGCAGAAATGGCGAAATCACTCCTTTGTTCATCAACCTTAAACCCTTTCTTCTCC 72
Query 71 ACCACTCTCTCTTCTTCGAAGAAGAACCAAATTGCATACTCAGGAAACAGCAAGAACCAG 130
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 73 ACCACTCTCTCCTCTTCGAAGAAGAACCAAATTGCATACTCGGGAAACAGCAAGAACCAG 132
Query 131 A-A--ATCGACTCTGTTATGCAACAGAAGGGAACTGTCGCTTGGATTTATGAGCAGCTTA 187
| | ||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 133 ACATCGTCGTCTCTGTTATGGAAAAGAAGGGAACTGTCGCTTGGATTTATGAGCAGCTTA 192
Query 188 GTTGCGATTAGTCTCGTGAGTAATGACAGAAGAAGACACGACGCGAATGCTGCGATTCTT 247
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 193 GTTGCGATTGGTCTCGTGAGTAATGACAGAAGAAGACACGACGCGAATGCAGCGATTCTT 252
Query 248 GAAGCTGACGACGATGAAGAGCTTCTGGAGAAAGTGAAGCAAGATCGGAAGAAGAGGATC 307
|||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 253 GAAGCTGATGACGATGAAGAGCTTCTCGAGAAAGTGAAGCAAGATCGGAAAAAGAGGATT 312
Query 308 GAGAGACAAGCTGTTCTTAATTCTGCTGTAAAGGAAAAGGGGTATTTGCAGGATCTTGTT 367
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 313 GAGAGACAAGCTGTTCTTAATTCTGCTGTCAAGGAAAAGGGGTATTTGCAGGATCTTGTT 372
Query 368 TATAAGTTAAGCAAAGTAGGACAAGCCATTGAGAACAATGATCTACCAGCTGCAGGTTTG 427
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TACAAGTTGAGCAAGGTAGGACAAGCCATTGAGAACAATGATCTACCAGCTGCAGGTTTG 432
Query 428 GTTTTGGGGAAAGGCATTGATACCGAATGGGTCAAAACCGTTAATTTGGCTTTCACAAAG 487
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 433 GTTTTGGGGAAAGGCATTGATACCGAATGGGTCAAAACCGTTAATCTGGCTTTCACAAAG 492
Query 488 TTGAGTACAAGCCCAGAAGAGAATACAGAAGTGGAAGCATTTAATTCATCATTAGCTTCT 547
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 493 TTGAGTACAAGCCCAGAAGAGAATACAGAGGTGGAAGCATTCAATTCATCATTGGCTTCT 552
Query 548 CTTATTACATCAGTGAACAAGAACGATATAGAGTCATCGAAGCTCGCTTTCGTGTCATCG 607
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 553 CTTATCACATCAGTGAACAAGAACGATATAGAGTCATCGAAGCTCGCTTTCGTTTCATCA 612
Query 608 GCTGGTGCATTTGAGAAATGGACGACTTTGACAGGTCTTTTGGAACAACTTAAGGGACTG 667
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 613 GCTGGTGCATTTGAGAAATGGACTACTTTGACAGGTCTTTTGGAACAGCTTAAGGGACTG 672
Query 668 TGATAGGCTG-CTACAAATTCTTT 690
|||||||||| |||||||||||||
Sbjct 673 TGATAGGCTGGCTACAAATTCTTT 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5