BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943614
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01320.1 | Symbols: ATSTE24, STE24 | Peptidase family M48 fa... 2257 0.0
> AT4G01320.1 | Symbols: ATSTE24, STE24 | Peptidase family M48
family protein | chr4:545796-549261 FORWARD LENGTH=1643
Length=1643
Score = 2257 bits (1222), Expect = 0.0
Identities = 1281/1310 (98%), Gaps = 1/1310 (0%)
Strand=Plus/Plus
Query 1 TCGCGGCTCAAGGTCACTCTTTTCTCAGCCATGGCGATTCCTTTCATGGAAACCGTCGTG 60
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TCGCGGTTC-AGGTCACTCTTTTCTCAGCCATGGCGATTCCTTTCATGGAAACCGTCGTG 139
Query 61 GGTTTTATGATAGTGATGTACATTTTTGAGACGTATTTGGATCTGAGGCAACTCACTGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GGTTTTATGATAGTGATGTACATTTTTGAGACGTATTTGGATCTGAGGCAACTCACTGCT 199
Query 121 CTCAAGCTTCCAACTCTTCCGAAAACCTTGGTTGGAGTTATTAGCCAAGAGAAGTTTGAG 180
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 200 CTCAAGCTTCCAACTCTCCCGAAAACCTTGGTTGGTGTAATTAGCCAAGAGAAGTTTGAG 259
Query 181 AAATCACGAGCATACAGTCTTGACAAAAGCTATTTTCACTTTGTTCATGAGTTTGTGACT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 260 AAATCACGAGCATACAGTCTTGACAAAAGCTATTTTCACTTTGTTCATGAGTTTGTAACT 319
Query 241 ATACTTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAGATATCT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 320 ATACTTATGGACTCTGCAATTTTGTTCTTTGGGATCTTGCCTTGGTTTTGGAAGATGTCT 379
Query 301 GGAGCTGTTCTACCGAGGTTGGGCCTCGATCCAGAGAATGAAATTCTGCATACTCTTTCA 360
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 380 GGAGCTGTTTTACCGAGGTTGGGCCTTGATCCAGAGAATGAAATACTGCATACTCTTTCA 439
Query 361 TTCTTGGCTGGTGTTATGACATGGTCACAGATCACTGATTTGCCATTTTCTTTGTACTCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TTCTTGGCTGGTGTTATGACATGGTCACAGATCACTGATTTGCCATTTTCTTTGTACTCA 499
Query 421 ACTTTCGTGATCGAGTCTCGGCATGGGTTCAACAAACAAACAATATGGATGTTCATTAGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 ACTTTCGTGATCGAGTCTCGGCATGGGTTCAACAAACAAACAATATGGATGTTCATTAGG 559
Query 481 GACATGATCAAAGGAACATTTCTCTCTGTCATACTTGGCCCACCCATTGTTGCCGCGATC 540
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 560 GACATGATCAAAGGAACATTCCTCTCTGTCATACTAGGCCCACCCATTGTTGCTGCGATA 619
Query 541 ATTTTTATAGTCCAGAAAGGAGGTCCTTATCTTGCCATCTATCTGTGGGCATTCATGTTT 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 ATTTTCATAGTCCAGAAAGGAGGTCCTTATCTTGCCATCTATCTGTGGGCATTCATGTTT 679
Query 601 ATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCAACAAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 ATCCTGTCTCTAGTGATGATGACTATATACCCGGTCTTGATAGCACCGCTCTTCAACAAG 739
Query 661 TTCACTCCTCTTCCAGATGGAGACCTCCGGGAGAAAATTGAGAAACTTGCTTCTTCTCTA 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 740 TTCACTCCTCTTCCAGATGGAGACCTCCGGGAGAAGATTGAGAAACTTGCTTCTTCTCTA 799
Query 721 AAGTTTCCTCTGAAGAAGCTGTTTGTTGTCGATGGATCTACAAGGTCAAGCCATAGCAAT 780
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 AAGTTTCCTTTGAAGAAGCTGTTTGTTGTCGATGGATCTACAAGGTCAAGCCATAGCAAT 859
Query 781 GCTTACATGTATGGTTTCTTCAAGAACAAAAGGATTGTTCTTTATGATACATTGATTCAG 840
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 860 GCTTACATGTATGGTTTCTTTAAGAACAAAAGGATTGTTCTTTATGATACGTTGATTCAG 919
Query 841 CAGTGCAAGAATGAGGATGAAATTGTGGCGGTTATTGCACACGAGCTTGGACATTGGAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 CAGTGCAAGAATGAGGATGAAATTGTGGCGGTTATTGCACACGAGCTTGGACATTGGAAA 979
Query 901 CTGAATCACACTACATACTCGTTCATTGCAGTTCAAATCCTTGCCTTCTTGCAATTTGGA 960
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 980 CTGAATCACACTACATACTCGTTCATTGCAGTTCAAATCCTTGCCTTCTTACAATTTGGA 1039
Query 961 GGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTTGGATTTGATACACAG 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1040 GGATACACTCTTGTCAGAAACTCCACTGATCTCTTCAGGAGTTTCGGATTTGATACACAG 1099
Query 1021 CCTGTTCTCATCGGTTTGATCATATTTCAGCACACTGTAATACCACTACAACATCTAGTA 1080
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1100 CCTGTTCTCATTGGTTTGATCATATTTCAGCACACTGTAATACCACTGCAACATCTAGTA 1159
Query 1081 AGCTTTGGCCTCAACCTTGTTAGTCGAGCCTTTGAGTTTCAGGCTGATGCTTTTGCTGTG 1140
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1160 AGCTTTGGCCTGAACCTCGTTAGTCGAGCGTTTGAGTTTCAGGCTGATGCTTTTGCTGTG 1219
Query 1141 AAGCTTGGCTATGCAAAAGATCTTCGTCCTGCTCTAGTGAAACTACAGGAAGAGAACTTG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 AAGCTTGGCTATGCAAAAGATCTTCGTCCTGCTCTAGTGAAACTACAGGAAGAGAACTTA 1279
Query 1201 TCAGCAATGAACACTGATCCATTGTACTCAGCTTATCACTACTCGCATCCTCCTCTTGTT 1260
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1280 TCAGCAATGAACACTGATCCATTGTACTCAGCTTATCACTACTCACATCCTCCTCTTGTT 1339
Query 1261 GAAAGGCTTCGAGCCATTGATGGAGAAGACAAGAAAACAGATTAAGTCCG 1310
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1340 GAAAGGCTTCGAGCCATTGATGGAGAAGACAAGAAGACAGATTAAGTCCG 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210507955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5