BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943629 Length=636 Score E Sequences producing significant alignments: (Bits) Value AT4G01150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 998 0.0 > AT4G01150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:493548-494850 FORWARD LENGTH=821 Length=821 Score = 998 bits (540), Expect = 0.0 Identities = 608/639 (95%), Gaps = 12/639 (2%) Strand=Plus/Plus Query 1 GAAGTTATCGGTGTGCTTCAATGGCGATATCAGTAGCAGCTTCGTCCTCTGTGGCCGTGA 60 |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 125 GAAGTTCTCGGCGTGCTTCAATGGCGATATCAGTAGCAGCTTCGTCCTCTATGGCCGTGA 184 Query 61 TAGTTCCACGTGTCCCCGCCATCTCCACCCGTTGCTCCGCCGCCCCTTACCTTCCTCCGC 120 | ||||||||||| |||||| | ||||||||||||||||||| |||||| | | Sbjct 185 TGGTTCCACGTGTTCCCGCCGTATCCACCCGTTGCTCCGCCGTCCCTTA------T---C 235 Query 121 TTCCTCCTCGCTCCTTTGGCCGATCCTCTTTCACCGTTCCGTTGAAGCTAGTTTCAGGGA 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 236 TTCCTCCTCGCTCCTTTGGCCGATCCTCTTTCACCGTTCCGTTGAAGCTTGTTTCAGGGA 295 Query 181 ATGGATTGCAAAAAGTTGAATTGATGAAGACAAGAGCTTCCTCAGAAGACACCTCGTCCA 240 ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| Sbjct 296 ATGGATTGCAAAAAGTTGAATTGTTGAAGACAAGAGCTTCTTCAGAAGAGACCTCGTCCA 355 Query 241 TTGACACCAACGAACTCATCACAGATTTGAAGGAAAAGTGGGATGGTCTTGAGAACAAAT 300 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 TTGATACCAACGAACTCATCACAGATTTGAAGGAAAAGTGGGATGGTCTTGAGAACAAAT 415 Query 301 CGACTGTACTCGTATATGGAGGAGGAGCCATTGTTGCTGTTTGGTTATCTTCCATTGTTG 360 | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 CTACTGTACTTATATATGGAGGAGGAGCCATTGTTGCTGTTTGGTTATCTTCCATTGTTG 475 Query 361 TTGGTGCCATCAACTCTGTTCCTCTGCTTCCGAAAGTAATGGAACTTGTCGGTCTCGGGT 420 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 476 TTGGTGCCATCAACTCTGTTCCTCTGCTTCCGAAAGTTATGGAACTTGTCGGTCTCGGGT 535 Query 421 ACACCGGATGGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAGGAATTGGCTG 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 ACACTGGATGGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAGGAATTGGCTG 595 Query 481 AGGATATTGAATCCTTGAAGAAGAAGATCGCAGGAAGCGAATAGATTCATTTTCAAATAA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 AGGATATTGAATCCTTGAAGAAGAAGATCGCAGGAAGCGAATAGATTCATTTTCAAATAA 655 Query 541 A-CCAGCTTTCTTTCTGTATGTTTTCCTGTAATATCGTGTTAT-T-ATACAATGTCTCTG 597 | |||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 656 AACCAGCTTTCTCTCTGTATGTTTTCCTGTAATATCGTGTTATATTATACAATGTCTCTG 715 Query 598 TTTCAACATTGTATCTGTTGCATCTGAAACTATTATCTT 636 ||||||||||||||||||||||||||||||||||||||| Sbjct 716 TTTCAACATTGTATCTGTTGCATCTGAAACTATTATCTT 754 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30693063817 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5