BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943679 Length=1183 Score E Sequences producing significant alignments: (Bits) Value AT4G00755.1 | Symbols: | F-box family protein | chr4:325065-32... 1567 0.0 > AT4G00755.1 | Symbols: | F-box family protein | chr4:325065-327008 FORWARD LENGTH=1584 Length=1584 Score = 1567 bits (848), Expect = 0.0 Identities = 1066/1167 (91%), Gaps = 31/1167 (3%) Strand=Plus/Plus Query 2 TTGAGTTTTATCGAAGAGGATGGATTTCGTCAACAATCTTGATACCGACACGTCGCTATC 61 ||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct 211 TTGAGTTTTATCGAACAAGATGGATTTCGTGAACAATCTTGATACCGACACGTCGCTATC 270 Query 62 GATTCTTTCTTGTCTAGATGATCCTTCAGATATTGTCCGTGCTAGTGCTGTCTCACGCTC 121 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 271 AATTCTCTCTTGTCTAGATGATCCATCAGATATTGTCCGTGCCAGTGCTGTCTCACGCTC 330 Query 122 CTGGCGACAATTTGCTGCTTTTGCATTTGCAGTGATTAAGTATAGTCTCTCCAGGAATCT 181 |||||||||| |||| | | | |||||||||||||||||| |||||| Sbjct 331 CTGGCGACAA---------TTTG----T---G-G-TTAAGTATAGTCTCTCCAAGAATCT 372 Query 182 ATGCTTGAAGTTGTTCCATCAGCTATCTAATGTGGATCATATAGTAGAAACAAGTAATGA 241 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 373 ATGCTTGAAGTTGTTCCATCAGCTATCTAATGTGGATCATATAATTGAAACAAGTAATGA 432 Query 242 TAGTAACCAAG-GTTCATCTGAAGCCGGGTCAAGCAGTCTCATCGATACAAGGCTACTTG 300 ||| || || | ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 433 TAGAAATGGAGAG-TCATCTGAAGCTGGGTCAAGCAGTCTCATGGATACAAGGCTACTTG 491 Query 301 AAAAAGAGCACCGGGCTTATGCCTTATTGGCTAGAGGATGCATGTCGTCCCCTATCCAAA 360 |||||||||||||||||| |||||| ||||||||||| |||||||| || ||||| ||| Sbjct 492 AAAAAGAGCACCGGGCTTTTGCCTTGTTGGCTAGAGGGTGCATGTCTTCACCTATTGAAA 551 Query 361 GCTGTATAGCTGATGCCATTATAGCTTCCAGTACTGATAATTTCCCAGCAGAGAGCATCT 420 ||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||| Sbjct 552 GCTGTATAGCTGATGCCATTAGAGCTTCCAGTACTGATAATTACCCAGTAGAAAGCATCT 611 Query 421 TAAACACACTCGAAGAA-AGAGATCGGATTGGTCGAACCCCTTCATATTGGTCGAGTACA 479 |||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 612 TAAACACACTCG-AGAAGAGAGATCGGATTGGTCGAACCCCTTCTTATTGGTCGAGTACT 670 Query 480 GGGCAGCACAGAACTTCGGTGCCCGAGA-CACTTCTTTACAGGTTGAACGGTGATTTGTG 538 ||||| |||| |||| |||||||||| | |||||||||||| ||||| ||||||||||| Sbjct 671 GGGCAACACAAAACTACGGTGCCCGA-ATCACTTCTTTACAAGTTGATTGGTGATTTGTG 729 Query 539 TGTCATTACTGAAATTAGCATTCAGCCTTTCCAAGCTTATTTTCAGCGTGGTCGTCCGAT 598 | ||||||||||| | ||||| || ||||||||||||||||||||||| |||| |||||| Sbjct 730 TCTCATTACTGAAGTCAGCATCCATCCTTTCCAAGCTTATTTTCAGCGCGGTCATCCGAT 789 Query 599 ATACTCGTCACATTATGTTCGTTTCCGGTTGGGTCACCACAACGACAATTCACC-CAACT 657 |||||| |||||||||||||||||||||||||||||| | || ||||||||||| | ||| Sbjct 790 ATACTCTTCACATTATGTTCGTTTCCGGTTGGGTCACGAAAAGGACAATTCACCTC-ACT 848 Query 658 GCAACAATTCACAGGATAAAAAAGGTGAGCCGGGAAAGAGTTCAGTTGAAAGCAACTATG 717 |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 849 ACAACAATTCACAGGATAAAAAAGGTGAGCCAGGAAAGAGTTCAATTGAAAGCAACTATG 908 Query 718 TATGGACTTACACTTCACAAGAGTTTCCGATGGCTCAGGAAAATCGATTGCAGAGCTTTA 777 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 909 TATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAGGAAAATCGATTGCAGAGCTTTC 968 Query 778 AGCTGCCAGAACCTGTTCTTTGCATTGGTGGGTATATCCTAGTTGAGTTTCTAGGTAGAG 837 |||| |||||||||||||||||||||||||||||| | ||||| |||||||||||| ||| Sbjct 969 AGCTTCCAGAACCTGTTCTTTGCATTGGTGGGTATCTGCTAGTCGAGTTTCTAGGTCGAG 1028 Query 838 TTCAGACACAAGAAATGGATGGCCAGTACTATATATGCGTGTCACATGTCAAAGTGGAGG 897 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1029 TTCAGACACAAGAAATGGATGGCCAATACTATATATGCGTGTCACATGTCAAAGTGGAGG 1088 Query 898 GAAGATCTCTAGCAAAGTCATTTCGAGTTGAGAATGTGGATGACAATGGAAAATTTGGAT 957 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1089 GAAGATCTCTAGCAAAATCATTTCGAGTTGAGAATGTGGATGACAATGGAAAGTTTGGAT 1148 Query 958 TGAAGGTTTTGAGTTACAGTGATCCGAAAGAAAA-GGAGGAGATGGATGCAGAGGTGGGG 1016 ||||||| |||||||||| |||||||||| |||| |||||||||||||||||||| ||| Sbjct 1149 TGAAGGTGTTGAGTTACAATGATCCGAAA-AAAATGGAGGAGATGGATGCAGAGGCCGGG 1207 Query 1017 CAGGAGATGGATGCAGACGCGGGGCAAACTCAGCTGAGAAATCTTGAACAGCTCTTGAAT 1076 ||||| ||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| Sbjct 1208 CAGGACATGGATGCAGAGGCGGGCCAAAGTCAGCTGAGAAACCTTGAACAGCTCTTGAAT 1267 Query 1077 TTGTTGCACAGGCATCCTCTCGAGGTTGTCAACTATGTTTGGCCTGA-G--TCAGACGAC 1133 ||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||| Sbjct 1268 TTGTTGCACAGGCATCCTCTCGATGTTGTCGACTATGTTTGGCCTGATGAGTCAGACGAC 1327 Query 1134 GAGTATGCTGAATCAGAAGATGAGGCT 1160 ||||||||||||||||||||||||||| Sbjct 1328 GAGTATGCTGAATCAGAAGATGAGGCT 1354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58082030565 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5