BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943680
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00752.1 | Symbols: | UBX domain-containing protein | chr4:... 2174 0.0
AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protei... 73.1 7e-12
> AT4G00752.1 | Symbols: | UBX domain-containing protein | chr4:317564-320895
REVERSE LENGTH=1719
Length=1719
Score = 2174 bits (1177), Expect = 0.0
Identities = 1359/1448 (94%), Gaps = 7/1448 (0%)
Strand=Plus/Plus
Query 6 CGATTTCTCCGGCGGAAATGGTCATTCCGACGAGAGACGCTATCCAATCCTATATGAGCA 65
|||||||||||||||| ||||| | |||||||||||||||||||||||| || |||||||
Sbjct 86 CGATTTCTCCGGCGGAGATGGTGAGTCCGACGAGAGACGCTATCCAATCTTACATGAGCA 145
Query 66 TCACTGGCGCGTCCGAGTCACTCGCGATTCAGCGACTTGAGGAACATGGCAATAATCTCC 125
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 146 TCACTGGCGCGTCCGAGTCACTCGCGATTCAGAGACTTGAGGAACATGGCAATAATCTCC 205
Query 126 CTGAAGCCATCAATTCCCACTTTAGAGGCGTGGAAAGAAGCATTTATGATGACTCAAGCT 185
||||||| |||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 206 CTGAAGCGATCAATGCCCACTTTAGAGATGTCGAAAGAAGCATTTATGATGACTCAAGCT 265
Query 186 TAGACAGTCGTTCAGACTACAATGTTGTGGAAGATAATAATCACGTTCGTGGTAACGAGA 245
|||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 266 TAGACACTCGTTCAGACTACAATGTTGTGGAAGATAACAATCACGTTCGTGGTAGCGAGA 325
Query 246 CTAGGCCAGTCAACGAGCCTAGGCCAGTCCCAGGCGCACTTCCATCTATCCTCTCGGCTG 305
|||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 326 CTAGGCCAGTTAACGAGTCTAGGCCAGTCCCTGGCGCACTTCCATCTATACTCTCGGCTG 385
Query 306 CTCGGGCTTTTAGACCGTCTTTGCTTCTAGATCCCAATTACAGACGAAATATCTTTAGGC 365
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 386 CTCGGGCTTTTAGACCGTCTTTGCTTCTAGATCCCAATTACAGACGGAATATCCTTAGGC 445
Query 366 AGCTCAGCGGCTCTGCTCTCTCTGGAAGTCCTTCGCCATCACCTCACACAGGAGAAGTCA 425
||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 446 AGCTCAGTGGCTCTGCTCTCTCTGGAAGTCCTTCTCCATCATCTCACACTGGAGAAGTCA 505
Query 426 CAGGGTTCCCTGCTCACTCTATGTGGGGAAATGATCAGACTCAACCTCCTCCTCGACTTG 485
| ||||||||||||||||||| |||||||||||||| ||| | ||||||| ||||||
Sbjct 506 CTGGGTTCCCTGCTCACTCTACCTGGGGAAATGATCACACT---CGTCCTCCTGGACTTG 562
Query 486 GAGAGGTTGGAGACGGTTATGCCAGGCACTCACCAACCTATGGATCCCAGGTCCATGGTG 545
||| |||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct 563 GAGCGGTTGGAGACGGTTATGCTAGGCATTCACCAAGCTATGGATCCCAGGTCCATGGTG 622
Query 546 GGACACATAGGGATGCTGAATCACCCGTCCATAGCAACGATGCAGAAGAAGAAATGATCA 605
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 623 GGACACATAGGGATGCTGACTCACCCGTCCATAGTAACGATGCAGAGGAAGAAATGATCA 682
Query 606 GAGCTGCCATTGAGGCCTCGAAGAAGGATTTTCAAGAGGGTCGTCACAACACTAGATATA 665
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 683 GAGCTGCCATTGAGGCCTCGAAGAAGGATTTTCAAGAGGGTCGTCTTAACACAAGATATA 742
Query 666 GTTTGGACAATGATCCATCTAGCGTTTTATCTCCAAGAGAGGTTATTAACCGGGAAGATG 725
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GTTTGGACAATAATCCATCTAGCGTTTTATCTCCAAGAGAGGTTATTAACCGGGAAGATG 802
Query 726 AGGACATTGCCCGTGCAATTTCGATGTCCTTAGAGATGGAAGAGCATGAGAATGCGTTGC 785
| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 803 AAGACATTGCCCGTGCAATTTCGATGTCCTTAGAGATGGAAGAGCATGAGAGTGTGTTGC 862
Query 786 GAGAACAACTAGCTGAATTTATGCCTCAGTCCGTGGAGCATCATGACCCATGTCAATCTA 845
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 863 GAGACCAACTAGCTGAATTTATGCCTCAGTCCGTGGAGCATCATGACCCATGTCAGTCTA 922
Query 846 ATACAAATGAAAGTACCAGATATCAGCCTGGGAGCTCTTCAGTGCAAGACAAGCGTGAAG 905
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 923 ATACAAATGAAAGTACTAGATATCAGCCTGGTAGCTCTTCAGTGCAAGACAACCGTGAAG 982
Query 906 ACATGAAACAAAAGCAGCCAATTAATACCAGCTCTCAGCACAGAAATGATCTCCAGAAT- 964
||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 983 ACATGAACCAAAAGCAGCCAATTAATTCCAGCTCTCAGCACAGACATGATCTCCAGAATA 1042
Query 965 GTTGAAGCTTCTTATCCTGAAGAGTGGGGTGGCATTCCGTCAAAAGAGCTACATGAGGCA 1024
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1043 G-TGAAGGTTCTTATCCTGAAGAGTGGGGTGGCATTCCGTCAAAAGAGCTACAAGAGGCA 1101
Query 1025 ATAATGCTGGAAAAGGCACTCTTTAGTGGAGTAGCTAAAGAAAGTGCTTCGCATAATAGT 1084
|||||||||||||| ||| ||||| ||||||||||||| ||||||||||| ||||||| |
Sbjct 1102 ATAATGCTGGAAAAAGCAATCTTTGGTGGAGTAGCTAACGAAAGTGCTTCACATAATAAT 1161
Query 1085 CAACATGGAGTTCTCAAGGAGTCACAATCTCCCG-ATAAGAGGGTCGTTGGACAGGAGCC 1143
|||| |||| ||| |||||||||||||||| ||| || ||||||| ||| || |||| ||
Sbjct 1162 CAACTTGGAATTCACAAGGAGTCACAATCT-CCGAATCAGAGGGTTGTTAGAGAGGAACC 1220
Query 1144 TGAGAGAAAGGTAGCTTTTCCCATTGAGCCGTCAGTTGAAAATGAAGATGCCATCACTCT 1203
||||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1221 TGAGAGAAAGGCAGCGCTTCCCATTGAGCCGTCTGGTGAAAATGAAGATGCCATCACTCT 1280
Query 1204 ACTTGTTAGAATGCCAGATAGCAGCCGTCATGGTCGTCGCTTTCTCAAATCAGACAAGCT 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 ACTTGTTAGAATGCCAGATAGCAGCCGTCATGGTCGTCGCTTTCTCAAATCAGACAAGCT 1340
Query 1264 TAAGTACCTTTTTCACTTCATAGATGCTGCTGGATTAGTCAAACCTGGCACATATAGAGT 1323
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 TAAGTACCTTTTTGACTTCATAGATGCTGCTGGATTAGTCAAACCTGGCACATATAGAGT 1400
Query 1324 GGTTAGACCATATCCTCGACGTGCTTTCAGCCTTCAAGACGGTGCCTTAACCTTTGAGGA 1383
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1401 GGTTAGACCATATCCTCGACGTGCTTTCAGCATTCAAGACGGTGCCTTAACCTTTGAGGA 1460
Query 1384 ACTCAGTCTCACCAACAAACAAGAAGCGTTGTTTCTGGAAATACTGGAGTAGCAGTGTAA 1443
|||||| ||||||||||||||||||||||||||||||||| | |||| |||||| | |||
Sbjct 1461 ACTCAGCCTCACCAACAAACAAGAAGCGTTGTTTCTGGAACTGCTGGTGTAGCAATATAA 1520
Query 1444 CCAGAGAT 1451
|| |||||
Sbjct 1521 CCTGAGAT 1528
> AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protein
| chr4:7071860-7075501 FORWARD LENGTH=2035
Length=2035
Score = 73.1 bits (39), Expect = 7e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 589 AGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCGAAGAA 630
|||||||||||||||||||||||||||||||||||| |||||
Sbjct 689 AGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGAA 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5