BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943716
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00430.1 | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane i... 1502 0.0
AT1G01620.1 | Symbols: PIP1C, TMP-B, PIP1;3 | plasma membrane i... 1005 0.0
AT4G23400.1 | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsi... 617 5e-176
AT4G00413.1 | Symbols: | pseudogene, similar to tomato ripenin... 148 8e-35
> AT4G00430.1 | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane
intrinsic protein 1;4 | chr4:185450-187627 REVERSE LENGTH=1653
Length=1653
Score = 1502 bits (813), Expect = 0.0
Identities = 924/976 (95%), Gaps = 14/976 (1%)
Strand=Plus/Plus
Query 11 AGAGGGTAGA-GG-GTGAAATGGAAGGCAAAGAAGAAGATGTTCGAGTGGGAGCTAACAA 68
|||||| ||| || | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 79 AGAGGG-AGAGGGAGAGAAATGGAAGGCAAAGAAGAAGATGTACGAGTGGGAGCTAACAA 137
Query 69 GTTCCCGGAGAGGCAACCCATCGGTACATCGGCTCAGTCCACCGACAAGGACTACAAAGA 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GTTCCCGGAGAGGCAACCCATCGGTACATCGGCTCAGTCCACCGACAAGGACTACAAAGA 197
Query 129 GCCACCCCCTGCACCACTGTTCGAGCCCGGCGAGCTGAGCTCATGGTCCTTCTACAGAGC 188
|||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 198 GCCACCTCCTGCGCCACTGTTCGAGCCCGGCGAGCTCAGCTCATGGTCTTTCTACAGAGC 257
Query 189 CGGAATTGCTGAGTTCATTGCTACTTTCCTGTTTCTCTACATCACTGTCTTGACTGTAAT 248
|||||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 258 CGGAATAGCTGAGTTTATCGCTACTTTCTTGTTTCTCTACATCACTGTTTTGACTGTAAT 317
Query 249 GGGAGTGAAGAGAGCACCAAACATGTGTGCTTCTGTTGGAATCCAAGGCATCGCTTGGGC 308
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 318 GGGAGTTAAGAGAGCACCAAACATGTGTGCTTCTGTTGGAATCCAAGGTATCGCTTGGGC 377
Query 309 TTTTGGTGGCATGATCTTTGCTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACACAT 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TTTTGGTGGCATGATCTTTGCTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACACAT 437
Query 369 CAACCCTGCGGTTACATTCGGTCTGTTCTTGGCTCGGAAGTTGTCTCTGACCAGAGCTGT 428
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 438 CAACCCTGCTGTAACATTCGGTCTGTTCTTGGCTCGGAAGTTATCTCTGACCAGAGCAGT 497
Query 429 GTTCTACATGATTATGCAATGTCTCGGAGCCATCTGTGGTGCTGGAGTCGTCAAGGGCTT 488
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 498 GTTCTACATGATTATGCAATGTCTTGGAGCCATCTGTGGTGCCGGAGTCGTCAAAGGTTT 557
Query 489 CCAGCCAACGCCTTACCAGACTCTCGGTGGCGGTGCTAACACCGTCGCTCACGGCTACAC 548
|||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 558 CCAGCCAACGCCGTACCAGACTCTCGGTGGTGGTGCTAACACCGTTGCTCATGGCTACAC 617
Query 549 CAAGGGTTCTGGACTCGGTGCTGAAATCATCGGAACCTTCGTTCTCGTCTACACCGTCTT 608
||| |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 618 CAAAGGTTCTGGCCTTGGTGCTGAAATCATCGGAACATTCGTTCTCGTCTACACTGTCTT 677
Query 609 CTCCGCCACCGACGCCAAGAGAAGCGCCCGTGACTCACACGTTCCGATTTTGGCGCCACT 668
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 678 CTCCGCCACCGACGCCAAGAGAAGCGCCCGTGACTCACACGTCCCGATTTTGGCGCCGCT 737
Query 669 CCCAATCGGATTTGCAGTGTTCTTGGTACACTTGGCAACAATTCCGATCACCGGGACCGG 728
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 738 CCCAATCGGATTTGCAGTGTTCTTGGTACACTTGGCAACAATACCGATCACCGGGACCGG 797
Query 729 AATCAACCCAGCTAGAAGTCTTGGAGCCGCAATTATCTACAACAAGGACCACTCTTGGGA 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AATCAACCCAGCTAGAAGTCTTGGAGCCGCAATTATCTACAACAAGGACCACTCTTGGGA 857
Query 789 CGACCATTGGATTTTCTGGGTTGGACCATTCATTGGAGCAGCTCTAGCAGCACTCTATCA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 858 TGACCATTGGATTTTCTGGGTTGGACCATTCATTGGAGCAGCTCTAGCAGCACTATATCA 917
Query 849 CCAGATTGTCATCAGAGCGATTCCTTTCAAGAGCAAGAGTTAGA-ACA-A-AGA----TT 901
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||
Sbjct 918 CCAGATTGTCATCAGAGCGATTCCTTTCAAGAGCAAGAGTTAGAGACACACAGAAAGATT 977
Query 902 CCACGGTCCAGAATTTGTTCTTTTAGTAATTTCTTTGCTTATCTATCTACTCTAGCTTCT 961
||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||
Sbjct 978 CCACGGTCCAGAATTTGTTCTTT-AGTAGTTTCTTTGCTTATCTATCTAATGTAGCTT-- 1034
Query 962 TGTGTTTTGCAATGTA 977
|||||||||||||||
Sbjct 1035 -GTGTTTTGCAATGTA 1049
> AT1G01620.1 | Symbols: PIP1C, TMP-B, PIP1;3 | plasma membrane
intrinsic protein 1C | chr1:225665-227302 REVERSE LENGTH=1308
Length=1308
Score = 1005 bits (544), Expect = 0.0
Identities = 753/855 (88%), Gaps = 9/855 (1%)
Strand=Plus/Plus
Query 28 ATGGAAGGCAAAGAAGAAGATGTTCGAGTGGGAGCTAACAAGTTCCCGGAGAGGCAACCC 87
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ATGGAAGGGAAAGAAGAGGATGTTCGAGTGGGAGCTAACAAGTTCCCGGAGAGGCAACCG 186
Query 88 ATCGGTACATCGGCTCAGTCCACCGACAAGGACTACAAAGAGCCACCCCCTGCACCACTG 147
|| ||||||||||||||| || ||||| |||||||| |||||||| || || ||| |
Sbjct 187 ATAGGTACATCGGCTCAG---ACGGACAAAGACTACAAGGAGCCACCACCAGCTCCATTT 243
Query 148 TTCGAGCCCGGCGAGCTGAGCTCATGGTCCTTCTACAGAGCCGGAATTGCTGAGTTCATT 207
|||||||| ||||||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct 244 TTCGAGCCAGGCGAGCTGAGTTCGTGGTCCTTCTACAGAGCCGGAATCGCCGAGTTCATA 303
Query 208 GCTACTTTCCTGTTTCTCTACATCACTGTCTTGACTGTAATGGGAGTGAAGAGAGCACCA 267
|| || ||||||||||| ||||| || || ||||| || |||||||||||||||||||||
Sbjct 304 GCCACCTTCCTGTTTCTATACATAACAGTATTGACAGTGATGGGAGTGAAGAGAGCACCA 363
Query 268 AACATGTGTGCTTCTGTTGGAATCCAAGGCATCGCTTGGGCTTTTGGTGGCATGATCTTT 327
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 364 AACATGTGTGCCTCTGTTGGAATCCAAGGCATTGCTTGGGCTTTCGGTGGCATGATCTTT 423
Query 328 GCTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACACATCAACCCTGCGGTTACATTC 387
|| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| |||||
Sbjct 424 GCCCTTGTCTACTGTACTGCTGGAATCTCTGGTGGGCACATAAACCCAGCGGTGACATTT 483
Query 388 GGTCTGTTCTTGGCTCGGAAGTTGTC-TCTGACCAGAGCTGTGTTCTACAT-GATTATGC 445
||||||||||||||||| ||| |||| | |||| |||||||| || ||||| | | ||||
Sbjct 484 GGTCTGTTCTTGGCTCGTAAGCTGTCAT-TGACGAGAGCTGTCTTTTACATCG-TGATGC 541
Query 446 AATGTCTCGGAGCCATCTGTGGTGCTGGAGTCGTCAAGGGCTTCCAGCCAACGCCTTACC 505
||||||||||||||||||| || || ||||| ||||| ||||||||||||| |||||||
Sbjct 542 AATGTCTCGGAGCCATCTGCGGCGCCGGAGTTGTCAAAGGCTTCCAGCCAAATCCTTACC 601
Query 506 AGACTCTCGGTGGCGGTGCTAACACCGTCGCTCACGGCTACACCAAGGGTTCTGGACTCG 565
| |||||||| || || || ||||| ||||||||||||||||| ||||| ||||| | |
Sbjct 602 AAACTCTCGGCGGAGGAGCCAACACAGTCGCTCACGGCTACACTAAGGGCTCTGGTTTGG 661
Query 566 GTGCTGAAATCATCGGAACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACCGACGCCA 625
||||||| || |||||||||||||| || |||||||| |||||||||||||| |||||||
Sbjct 662 GTGCTGAGATAATCGGAACCTTCGTCCTTGTCTACACGGTCTTCTCCGCCACTGACGCCA 721
Query 626 AGAGAAGCGCCCGTGACTCACACGTTCCGATTTTGGCGCCACTCCCAATCGGATTTGCAG 685
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || |
Sbjct 722 AGAGAAGCGCTCGTGACTCCCACGTTCCGATTTTGGCACCACTCCCAATCGGATTCGCTG 781
Query 686 TGTTCTTGGTACACTTGGCAACAATTCCGATCACCGGGACCGGAATCAACCCAGCTAGAA 745
|||||||||| |||||||| || ||||| |||||||| || ||||| ||||||||||| |
Sbjct 782 TGTTCTTGGTTCACTTGGCGACGATTCCAATCACCGGAACAGGAATTAACCCAGCTAGGA 841
Query 746 GTCTTGGAGCCGCAATTATCTACAACAAGGACCACTCTTGGGACGACCATTGGATTTTCT 805
|||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 842 GTCTTGGAGCTGCAATCATCTACAACAAGGACCACGCTTGGGACGACCACTGGATATTCT 901
Query 806 GGGTTGGACCATTCATTGGAGCAGCTCTAGCAGCACTCTATCACCAGA-TTGTCATCAGA 864
|||| ||||||||||||||||||||||| || || || || ||||| | |||||||||||
Sbjct 902 GGGTCGGACCATTCATTGGAGCAGCTCTTGCGGCTCTTTACCACCA-ACTTGTCATCAGA 960
Query 865 GCGATTCCTTTCAAG 879
|| ||||| ||||||
Sbjct 961 GCCATTCCATTCAAG 975
> AT4G23400.1 | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsic
protein 1;5 | chr4:12220743-12222371 FORWARD LENGTH=1129
Length=1129
Score = 617 bits (334), Expect = 5e-176
Identities = 692/867 (80%), Gaps = 16/867 (2%)
Strand=Plus/Plus
Query 28 ATGGAAGGCAAAGAAGAAGATGTTCGA-GTGGGAGCTAACAAGTTCCCGGAGAGGCAACC 86
|||||||||||||||||||| | || | || ||||| ||||||||||| ||||| || ||
Sbjct 50 ATGGAAGGCAAAGAAGAAGACG-TCAATGTTGGAGCCAACAAGTTCCCAGAGAGACAGCC 108
Query 87 CATCGGTACATCGGCTCAGTCCACCGA-CAAGGACTACAAAGAGCCACCCCCTGCACCAC 145
|||||||| |||||||| | || ||||||||| || || ||||| || || ||
Sbjct 109 GATCGGTACGGCGGCTCAG-ACGGAGAGCAAGGACTATAAGGAACCACCACCGGCGCCGT 167
Query 146 TGTTCGAGCCCGGCGAGCTGAGCTCATGGTCCTTCTACAGAGCCGGAATTGCTGAGTTCA 205
| ||||| ||||||||||| | || ||||| ||||||||||| || || ||||||||||
Sbjct 168 TTTTCGAACCCGGCGAGCTCAAATCTTGGTCTTTCTACAGAGCAGGGATAGCTGAGTTCA 227
Query 206 TTGCTACTTTCCTGTTT-CTCTACATCACTGTCTTGACTGTAATGGGAGTGAAGAGAGCA 264
| || |||||||| ||| |||||| |||| || ||||| || ||||| || ||||||||
Sbjct 228 TAGCCACTTTCCT-TTTCCTCTACGTCACCGTTTTGACAGTCATGGGTGTTAAGAGAGCT 286
Query 265 CCAAACATGTGTGCTTCTGTTGGAATCCAAGGCATCGCTTGGGCTTTTGGTGGCATGATC 324
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CCCAATATGTGTGCCTCTGTTGGAATCCAAGGCATCGCTTGGGCTTTTGGTGGCATGATC 346
Query 325 TTTGCTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACACATCAACCCTGCGGTTACA 384
||||||||||| ||||||||||||||||| ||||| ||||| || || || ||||| ||
Sbjct 347 TTTGCTCTTGTTTACTGTACTGCTGGAATCTCAGGAGGACATATTAATCCGGCGGTGACT 406
Query 385 TTCGGTCTGTTCTTGGCTCGGAAGTTGTCTCTGACCAGAGCTGTGTTCTACATGATTA-T 443
|| ||| |||||||||| ||||| | ||| | ||||||||| |||||||||| | || |
Sbjct 407 TTTGGTTTGTTCTTGGCGAGGAAGCTATCTTTAACCAGAGCTCTGTTCTACAT-AGTAAT 465
Query 444 GCAATGTCTCGGAGCCATCTGTGGTGCTGGAGTCGTCAA-GGGCTTCCAGCCAACGCCT- 501
||| || || ||||| || ||||||||||| || || || ||| ||| | ||| || |
Sbjct 466 GCAGTGCCTTGGAGCTATATGTGGTGCTGGTGTGGTTAAAGGGTTTCAA-CCAGGGC-TG 523
Query 502 TACCAGACTC-TCGGTGGCGGTGCTAACACCGTCGCTCACGGCTACACCAAGGGTTCTGG 560
|||||||| | || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct 524 TACCAGACGAAT-GGCGGTGGAGCTAATGTGGTGGCTCATGGTTACACAAAGGGTTCAGG 582
Query 561 ACTCGGTGCTGAAATCATCGGAACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACCGA 620
|| ||||| || || | ||||| || ||||| || ||||| || ||||| || || ||
Sbjct 583 TCTTGGTGCAGAGATTGTTGGAACTTTTGTTCTGGTTTACACTGTTTTCTCAGCTACTGA 642
Query 621 CGCCAAGAGAAGCGCCCGTGACTCACACGTTCCGATTTTGGCGCCACTCCCAATCGGATT 680
|| |||||||| ||| | ||||| || || || || ||||| || || ||||| || ||
Sbjct 643 TGCTAAGAGAAGTGCCAGAGACTCTCATGTCCCTATCTTGGCTCCGCTTCCAATTGGGTT 702
Query 681 TGCAGTGTTCTTGGTACACTTGGCAACAATTCCGATCACCGGGACCGGAATCAACCCAGC 740
||| || |||||||| |||||||| || || || || || || || || || ||||| ||
Sbjct 703 TGCTGTCTTCTTGGTGCACTTGGCTACCATCCCAATTACTGGAACTGGCATTAACCCGGC 762
Query 741 TAGAAGTCTTGGAGCCGCAATTATCTACAACAAGGACCACT-CTTGGGACGACCATTGGA 799
|| ||||| ||||| || || |||||||||||||| || | ||||||| ||||||||||
Sbjct 763 CAGGAGTCTCGGAGCTGCCATCATCTACAACAAGGATCA-TGCTTGGGATGACCATTGGA 821
Query 800 TTTTCTGGGTTGGACCATTCATTGGAGCAGCTCTAGCAGCACTCTATCACCAGATTGTCA 859
| |||||||| || ||||||||||| || || || || || || || || ||||| ||||
Sbjct 822 TCTTCTGGGTCGGTCCATTCATTGGTGCTGCGCTTGCTGCTCTGTACCATCAGATAGTCA 881
Query 860 TCAGAGCGATTCCTTTCAAGAGCAAGA 886
||||||| |||||||||||| |||||
Sbjct 882 TCAGAGCTATTCCTTTCAAGTCCAAGA 908
> AT4G00413.1 | Symbols: | pseudogene, similar to tomato ripening
associated membrane protein, blastp match of 91% identity
and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato
ripening associated membrane protein {Lycopersicon esculentum}
| chr4:178039-178161 REVERSE LENGTH=123
Length=123
Score = 148 bits (80), Expect = 8e-35
Identities = 86/89 (97%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 382 ACATTCGGTCTGTTCTTGGCTCGGAAGTTGTCTCTGACCAGAGCTGTGTTCTACATGATT 441
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 28 ACATTTGGTCTGTTCTTGGCTCGGAAATTGTCTCTGACCAGAGCAGTGTTCTACATGATT 87
Query 442 ATGCAATGTCTCGGAGCCATCTGTGGTGC 470
|||||||||||||||||||||||||||||
Sbjct 88 ATGCAATGTCTCGGAGCCATCTGTGGTGC 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5