BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943720
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00370.1 | Symbols: ANTR2, PHT4;4 | Major facilitator superf... 2549 0.0
> AT4G00370.1 | Symbols: ANTR2, PHT4;4 | Major facilitator superfamily
protein | chr4:162897-166357 REVERSE LENGTH=2128
Length=2128
Score = 2549 bits (1380), Expect = 0.0
Identities = 1684/1816 (93%), Gaps = 80/1816 (4%)
Strand=Plus/Plus
Query 120 GATTTTCCCGCTTCAGCGTCTCTCAGTCCCTCTCTCGGCTTTATCCGAAGCTTTATTATT 179
|||||||||||||||||||||||||||| ||||||||||||||||| || | |
Sbjct 102 GATTTTCCCGCTTCAGCGTCTCTCAGTCTCTCTCTCGGCTTTATCC-AA-----A--GGT 153
Query 180 TCAAAACCTTCGTTTTCTCCGCTTTTATGGAAGAAGCTTGAATCCTTCTCTCTTCTTCTT 239
| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 154 T-----CCTTCGTTTACTCCGCTTCTATGGAAGAAGCTTGAATCCTTCTCTCTTCTTCTT 208
Query 240 C-CC-T-TT-CC----C---TTT-TTC---G-AG----ATGGCCCTCGGTGGCTTGATTT 279
| || | || || | ||| ||| | || ||||||||||||||||||||||
Sbjct 209 CTCCTTCTTCCCTTGACATTTTTGTTCTGAGAAGCAACATGGCCCTCGGTGGCTTGATTT 268
Query 280 CAAACCGGAACTTGGGTTCCTTCATCGG-TGCAGGCGATGGTTGTCAGAGACTTGGAAAA 338
|||| |||||||| |||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 269 CAAATCGGAACTTCGGTTCCTTCATCGGCT-CAGGCAATGGTTGTCAGAGACTTGGAAAA 327
Query 339 AGTCGTTCAGAGGTTTCCAACAGAGTTATGCTTTTTCCAAATGCATTCTTGTGCCGTAAT 398
||| || ||||||||| | | | | |||||||||||||||||| ||||||||||||
Sbjct 328 AGTGGTGCAGAGGTTT-C--C--A---A-GCTTTTTCCAAATGCATTGTTGTGCCGTAAT 378
Query 399 CATCAACCTCTGCAAGCTAGTTTACAGCATGAATTGGGACACA-G-G-ACAAGTTTTGGA 455
|||||||||||||||||||||||||| ||||||| |||||||| | | | ||||||||||
Sbjct 379 CATCAACCTCTGCAAGCTAGTTTACATCATGAATCGGGACACATGAGAAGAAGTTTTGGA 438
Query 456 TGTTTCCTTCAGCCAAGAATGGAC--TCTACATTTAGGTTTAGGAACAATTTCAAGGAAT 513
||||||||||| |||||||||||| | || | ||||||||||| || | |
Sbjct 439 TGTTTCCTTCAACCAAGAATGGACAGTGTA-A-TTAGGTTTAGG---AA---C-----A- 484
Query 514 GTGGAATAAGCAAGATCAACAGATCTCGTGCTTACTACAAATCAGAGGACTCCGATATCA 573
|| || ||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 485 GT---AT---CAAGATCAACAGATCTCGTGCTTACTACAAATCAGAGGAGTCAGATATCA 538
Query 574 CTGAAGGAGTTGTGCCATCGGTTGATGGCTCAGCTGAAGCTATTTTAGTTGAAGGAAATC 633
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGGAAGGAGTTGTGCCATCGGCTGATGGCTCAGCTGAAGCTATTTTAGTTGAAGGAAATC 598
Query 634 TACAGAACGCATCTCC---GT----G--GTTTCCTAGACGCTGGGTGATCGTCTTGTTAT 684
|||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 599 TACAGAACGCATCTCCATGGTGGCAGCAGTTTCCTAGACGCTGGGTGATCGTCTTGTTAT 658
Query 685 GCTTTGCGTCATTTCTTCTTTGCAATATGGACCGTGTGAACATGAGCATTGCAATTCTTC 744
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCTTTTCGTCTTTTCTTCTTTGCAATATGGACCGTGTGAACATGAGCATTGCAATTCTTC 718
Query 745 CCATGTCACAAGAATATAACTGGAGTAGTGCAACAGTTGGCTTAATTCAGTCCTCTTTCT 804
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 CCATGTCACAAGAATATAACTGGAGTAGTGCAACTGTTGGCTTAATTCAGTCCTCTTTCT 778
Query 805 TCTGGGGCTATTTACTTACTCAGATTCTGGGAGGCATATGGGCAGATAAGTTTGGCGGGA 864
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 TCTGGGGCTATTTACTTACTCAGATTCTGGGAGGTATATGGGCAGATAAGTTTGGCGGGA 838
Query 865 AGGTGGTTTTAGGTTTTGGTGTTGTCTGGTGGTCCTTTGCCACCATTATGACACCTATTG 924
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 AGGTTGTTTTAGGTTTTGGTGTTGTCTGGTGGTCCTTTGCCACTATTATGACACCTATTG 898
Query 925 CTGCTAGACTTGGTCTCCCTTTTTTGCTTGTCGTGCGAGCGTTCATGGGCATTGGCGAGG 984
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 899 CTGCTAGACTTGGTCTTCCTTTTTTGCTTGTAGTGCGGGCGTTCATGGGCATTGGCGAGG 958
Query 985 GTGTTGCAATGCCTGCTATGAACAACATGCTTTCTAAATGGATCCCTGTCTCAGAGAGAA 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTGTTGCAATGCCTGCTATGAACAACATGCTTTCTAAATGGATCCCTGTCTCAGAGAGAA 1018
Query 1045 GCAGATCGCTTGCACTAGTCTACAGTGGCATGTATCTTGGTTCTGTTACAGGATTGGCAT 1104
|||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1019 GCAGATCGCTTGCACTGGTCTATAGTGGCATGTATCTTGGTTCCGTCACAGGATTGGCAT 1078
Query 1105 TCTCTCCTATGCTAATCCA-CAAGTTCGGATGGCCATCGGTTTTCTATTCGTTTGGCTCC 1163
|||||||||||||||| || |||||||||||||||||| |||||||| ||||||||||||
Sbjct 1079 TCTCTCCTATGCTAAT-CACCAAGTTCGGATGGCCATCTGTTTTCTACTCGTTTGGCTCC 1137
Query 1164 CTTGGAAGTATATGGTTTTTGCTATGGCTAAAATTTGCATATAGCTCTCCCAAGGATGAC 1223
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTCGGAAGTATATGGTTTTTGCTATGGCTAAAATTTGCATATAGCTCTCCCAAGGATGAC 1197
Query 1224 CCGGACCTAAGTGAAGAAGaaaaaaaGGTTATACTGGGAGGTAGCAAACCACGGGAACCT 1283
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1198 CCGGACCTAAGTGAAGAAGAAAAAAAGGTTATACTGGGAGGTAGCAAACCAAGGGAACCT 1257
Query 1284 GTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCACCTGTCTGGGCTCTCATAATT 1343
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1258 GTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCCCCAGTCTGGGCTCTCATAATT 1317
Query 1344 TCCCACTTCTGCCATAATTGGGGAACATTCATACTATTGACATGGATGCCCACATATTAC 1403
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1318 TCCCACTTCTGCCATAATTGGGGAACTTTCATACTATTGACATGGATGCCCACATATTAC 1377
Query 1404 AATCAGGTTTTGAAGTTCAACCTCACTGAATCTGGGCTACTATGCGTCTTACCGTGGCTA 1463
|||||||| ||||||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct 1378 AATCAGGTCTTGAAGTTCAACCTCACTGAATCCGGGCTACTATGCGTTTTGCCATGGCTA 1437
Query 1464 ACCATGGCTGTTTTCGCTAATATTGGAGGTTGGATTGCTGATACTCTAGTGAGCAGAGGT 1523
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1438 ACCATGGCTGTTTTTGCTAATATTGGAGGTTGGATTGCTGATACTCTTGTGAGCAGAGGT 1497
Query 1524 CTTTCAATTACAAACGTTCGAAAGATTATGCAATCAATTGGTTTTCTAGGTCCTGCCTTC 1583
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1498 CTTTCAATTACAAACGTTCGAAAGATTATGCAATCAATTGGTTTTCTAGGCCCTGCCTTC 1557
Query 1584 TTCCTGAGTCAGCTGAGCCATGTCAAAACTCCAGCAATGGCGGTTCTCTGCATGGCATGC 1643
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1558 TTCCTGAGTCAGCTGAGCCATGTCAAAACTCCAGCAATGGCAGTTCTCTGCATGGCATGC 1617
Query 1644 AGTCAGGGGTCTGATGCATTCTCTCAGTCGGGTCTCTACTCTAATCATCAAGACATTGGC 1703
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AGTCAGGGCTCTGATGCATTCTCTCAGTCGGGTCTCTACTCTAATCATCAAGACATTGGC 1677
Query 1704 CCACGATACGCTGGTGTACTCTTAGGACTATCAAACACAGCAGGAGTCCTCGCTGGTGTC 1763
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1678 CCACGATACGCTGGTGTACTCTTAGGACTATCAAACACAGCAGGAGTCCTAGCTGGTGTC 1737
Query 1764 TTTGGCACTGCAGCTACTGGTTACATCCTCCAACGAGGTTCATGGGATGATGTGTTCAAA 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TTTGGCACTGCAGCTACTGGTTACATCCTCCAACGAGGTTCATGGGATGATGTGTTCAAA 1797
Query 1824 GTAGCAGTTGCACTGTATCTAATTGGAACTCTGGTCTGGAACTTGTTCGCAACCGGAGAG 1883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GTAGCAGTTGCACTGTATCTAATTGGAACTCTGGTCTGGAACTTGTTCGCAACCGGAGAA 1857
Query 1884 AAAATTCTCGACTAGA 1899
||||||||||||||||
Sbjct 1858 AAAATTCTCGACTAGA 1873
Score = 95.3 bits (51), Expect = 2e-18
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 66 CAACGAGTAGAAGATGATGAGCCACGTGTCACTATATCGACCCCCCTTTCCTCT 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 25 CAACGAGTAGAAGATGATGTGCCACGTGTCACTATATCGACCCCCCTTTCCTCT 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94979431140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5