BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943755
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00090.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2152 0.0
> AT4G00090.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:34091-36880 FORWARD LENGTH=1722
Length=1722
Score = 2152 bits (1165), Expect = 0.0
Identities = 1282/1339 (96%), Gaps = 6/1339 (0%)
Strand=Plus/Plus
Query 2 TAGTTGTCAAATTCGAAAAATGGAATCGGTCCTTGTAGTGGCCATTGCATCTGTTA-TCT 60
||||| ||||| |||||| ||||| || ||||||||||||| ||||||||| |||| ||
Sbjct 125 TAGTTATCAAACTCGAAAGATGGATTCTGTCCTTGTAGTGGGCATTGCATCGGTTATTC- 183
Query 61 TCGGTGCGTTGATCGCCGTGCTCTTCTTCGGGAGCTACTTCCGGAAGCGGACATCGGAGG 120
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 184 TCGGTGCGTTGATCGCTGTACTCTTCTTCGGTAGCTACTTCCGGAAGCGGACATCGGAGG 243
Query 121 TGCAATCAATGGCCAAAGCGGAGCCTCAGGATCCGATCCGGAATCCCAAA-TCGAATCAT 179
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 244 TGCAATCCATGGCCAAAGCGGAGCCTCAGGATCCGATCCGGAAT-CCAAAGTCGAATCAT 302
Query 180 CCTGCTCCCAAGAAGAATCATCCCAAATCTCAAGCGTCCGACAAGAACCAGAACAAACGG 239
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 303 CCTGCTCCGAAGAAGAATCATCCCAAATCTCAAGCGTCCGATAAGAATCAGAACAAACGG 362
Query 240 CACCATCCGTTAGACTTAAACACGTTGAAAGGCCACGGTGATGCTGTTACTGGACTCTGT 299
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CATCATCCTTTAGATTTAAACACGTTGAAAGGCCACGGTGATGCTGTTACTGGACTCTGT 422
Query 300 TTCTCATCCGATGGAAGGAGCTTGGCCACAGCTTGCGCTGATGGAGTGATCAGGGTGTTC 359
||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 423 TTCTCGTCCGATGGAAAGAGCTTGGCCACAGCTTGCGCTGATGGAGTAATCAGGGTGTTC 482
Query 360 AAGCTAGATGATGCCTCAAGCAAAAGCTTCAAATTCTTAAGGATAAATCTTCCTGCTGGA 419
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 483 AAGCTAGATGATGCATCAAGCAAAAGCTTCAAATTTTTAAGGATAAATCTTCCTGCTGGA 542
Query 420 GGGCATCCAACCGCTGTGACATTTGCTGACGATGCCTCATCTATTGTTGTGGCTTGTCAT 479
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GGACATCCAACCGCCGTGGCATTTGCTGACGATGCCTCATCTATTGTTGTGGCTTGTCAT 602
Query 480 CATATGTCTGGTTCATCTTTGTACATGTACGGTGAAGAAAAGCAAAAGGATCAGCAAGGG 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 603 CATATGTCTGGTTCATCTTTGTACATGTACGGTGAAGATAAGCAAAAGGATCAGCAAGGG 662
Query 540 AAGCTTCCTCTTCCTAGTATCAAATGGGACCACCATCATATTCATGAGAAGAGAGCCGTC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 663 AAGCTTCCTCTTCCTAGTATCAAATGGGACCACCATCATATTCATGAGAAGAGATCAGTG 722
Query 600 CTTACCATCTCTGGAGCTACTGCAACTTATGGTACTGCTGATGGAAGTGCTGTCATTGCC 659
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 723 CTTACCATCTCTGGAGCTACTGCAACTTACGGTACTGCTGATGGAAGTGTTGTCATTGCC 782
Query 660 TCTTGTTCTGAAGGGACTGATATCATACTTTGGCATGGGAAAACTGGGAGGAATTTGGGA 719
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 783 TCTTGTTCTGAAGGGACTGATATCGTCCTTTGGCATGGGAAAACTGGGAGGAATTTGGGA 842
Query 720 CATGTTGATACAAACCAGTTGAAGAACCACATGGCAGCTGTATCCCCTAATGGCCGTTTC 779
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 843 CATGTTGATACAAACCAGTTGAAGAACCACATGGCAGCTGTATCACCAAATGGACGTTTT 902
Query 780 TTGGCAGCTGCAGCATTTACTGCAGATGTGAAGGTGTGGGAAATTGTGTATCAGAAAGAT 839
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 903 TTGGCAGCTGCAGCATTTACTGCAGATGTGAAAGTGTGGGAAATTGTGTATCAGAAAGAT 962
Query 840 GGTTCTGTGAAGGAGGTTTCAAGAGTAATGCAACTTAAAGGCCACAAGAGTGCAGTGACT 899
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 963 GGTTCTGTGAAAGAGGTTTCAAGAGTTATGCAACTTAAAGGCCACAAGAGTGCAGTGACT 1022
Query 900 TGGTTATGCTTTTCTCCAAACTCAGAGAAAATCATCACCGCTTCAAAAGATGGTTCAATA 959
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1023 TGGTTATGCTTTTCTCCAAACTCAGAGCAAATCATCACCGCTTCAAAAGATGGTTCAATA 1082
Query 960 AGAGTCTGGAACATCAATGTCCGCTATCATCTTGATGAGGATCCAAAGACTTTGAAAGTG 1019
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1083 AGAGTCTGGAACATCAATGTCCGTTATCATCTTGATGAGGATCCAAAGACTTTGAAGGTG 1142
Query 1020 TTCCCGATTCCACTGTGCGACTCAGGAGGCAATCCGTTGCACTATGATCGTCTCAGCTTA 1079
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TTCCCGATTCCACTTTGCGACTCAGGAGGCAATCCGTTGCACTATGATCGTCTCAGCTTA 1202
Query 1080 TGCCCAGAGGGAAAGATATTGGCAGCAAGCCATGGTTCCACATTGCAGTGGTTATGTGCT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TGCCCAGAGGGAAAGATATTGGCAGCAAGCCATGGTTCCACATTGCAGTGGTTATGTGCT 1262
Query 1140 GAAACTGGAAATGTCTTGGACACAGCTGAGAAAGCCCACGAAGGGGATATCACATGCATT 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GAAACTGGAAATGTCTTGGACACAGCTGAGAAAGCCCACGAAGGGGATATCACATGCATA 1322
Query 1200 TCTTGGGCACCCAAGGCTATCACAGTTGGGGAGAGACATGCCATGGTTTTAGCCACATCA 1259
|||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||
Sbjct 1323 TCTTGGGCACCCAAGGCTATTACAGTTGGGGAAAGACATGCCATGGTTTTGGGGACATCA 1382
Query 1260 GGCGATGACAAGAAAGTGAAGCTGTGGGAAGCTCCAAAGTCGCAATCTTTGTAGACTC-- 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1383 GGCGATGACAAGAAAGTGAAGCTGTGGGAAGCTCCAAAGTCGCAATCTTTGTAGGCTCTC 1442
Query 1318 GCATACACGTAGTCCCTTG 1336
|||||||||||||||||||
Sbjct 1443 GCATACACGTAGTCCCTTG 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65762713950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5