BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943760 Length=1255 Score E Sequences producing significant alignments: (Bits) Value AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DN... 1964 0.0 > AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17792-20066 FORWARD LENGTH=1489 Length=1489 Score = 1964 bits (1063), Expect = 0.0 Identities = 1194/1254 (95%), Gaps = 22/1254 (2%) Strand=Plus/Plus Query 9 ATACACAGA-TTTAGGATGAGCCAATGTGTTCCAAACTGTCACATCGATGATACTACGGC 67 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 56 ATACACAGATTTTAGGATGAGCCAATGTGTTCCAAACTGTCACATCGATGATACT-C--C 112 Query 68 AGCCGCAGCAGCCACCACCACCGTCCGCTCCATCACAGCAGCGGACATCCCCATATTAGA 127 | |||||||||||||||||||||||||||| |||||| || ||||||||||||||||| Sbjct 113 -G--GCAGCAGCCACCACCACCGTCCGCTCCACCACAGCCGCAGACATCCCCATATTAGA 169 Query 128 CTACGAGGTAGCCGAGCTGACGTGGGAGAACGGGCAACTGGGCTTGCACGGCTTAGGTCC 187 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 170 CTACGAGGTAGCCGAGCTGACGTGGGAGAACGGGCAACTAGGCTTGCACGGCTTAGGTCC 229 Query 188 ACCGCGAGTGACGGCTTCGTCGACCAAGTACTCCACAGGCGCCGGTGGAACGTTGGAGTC 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 ACCGCGAGTGACGGCTTCGTCGACCAAGTACTCCACAGGCGCCGGTGGAACGTTGGAGTC 289 Query 248 GATAGTGGACCAAGCTACTCGCCTCCCTAACCCTAAGCCCACGGATGAGCTCGTCCCGTG 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 GATAGTGGACCAAGCTACTCGCCTCCCTAACCCTAAGCCCACGGATGAGCTCGTCCCGTG 349 Query 308 GTTCCACCATCGCTCTTCCAGGGCCGCCATGGCCATGGACGCGCTTGTCCCTTGCTCCAA 367 |||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 350 GTTCCATCATCGCTCCTCCAGGGCCGCGATGGCAATGGACGCGCTTGTCCCTTGCTCCAA 409 Query 368 CCTAGTACAGGAGCAGCAGAGCAAGCCCGGTGGCGTTGGCTCCACCCGGGTGGGGTCATG 427 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 410 CCTAGTACACGAGCAGCAGAGCAAGCCTGGTGGCGTTGGCTCCACCCGGGTGGGGTCATG 469 Query 428 TAGCGATGGTCGTACCATGGCCGGTGGAAAACGAGCCAGAGTGGCGCCGGAGTGGAGCGG 487 |||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| Sbjct 470 TAGCGATGGTCGTACCATGGGCGGTGGAAAACGAGCAAGAGTGGCACCGGAGTGGAGCGG 529 Query 488 GGGCGGGAGTCAGCGGCTGACCATGGATACTTACGACGTAGGTTTCACCTCAACATCCAT 547 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 530 CGGCGGGAGTCAGCGGCTGACCATGGACACTTACGACGTAGGTTTCACCTCAACATCAAT 589 Query 548 GGGCTCGCATGATAACACCATCGACGATCATGACTCCGTCTGCCACAGCCGCCCACAGAT 607 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 590 GGGCTCGCACGATAACACAATCGACGATCATGACTCCGTCTGCCACAGCCGCCCACAGAT 649 Query 608 GGAGGACGAAGAAGAGAAGAAAGCCGGAGGCAAATCATCAGTTTCAACCAAGAGAAGCAG 667 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 650 GGAGGACGAAGAAGAGAAGAAAGCCGGAGGAAAATCATCAGTTTCAACCAAGAGAAGCAG 709 Query 668 AGCTGCTGCTATTCATAACCAATCCGAACGTAAGAGGAGAGATAAGATCAATCAAAGGAT 727 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 710 AGCTGCTGCTATTCATAACCAATCCGAACGTAAGAGGAGAGATAAAATCAATCAAAGGAT 769 Query 728 GAAGACTTTGCAGAAACTGGTTCCCAATTCCAGCAAGACGGATAAAGCATCTATGTTGGA 787 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 GAAGACTTTGCAAAAACTGGTTCCCAATTCCAGCAAGACGGATAAAGCATCTATGTTGGA 829 Query 788 TGAAGTGATAGAGTACTTGAAGCAACTTCAAGCACAAGTGAGCATGATGAGCAGAATGAA 847 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 TGAAGTGATAGAGTATTTGAAGCAACTTCAAGCACAAGTGAGCATGATGAGCAGAATGAA 889 Query 848 CATGCCTTCCATGATGCTTCCTATGGCCATGCAGCAACAACAACAACAACTACAAATGTC 907 |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 890 TATGCCTTCTATGATGCTTCCTATGGCCATGCAGCAACAACAACAAC---TACAAATGTC 946 Query 908 TCTCATGTCCAATCCCATGGGTTTAGGGATTGGCATGGGGATGCCCGGTCTCGGTCTCCT 967 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 947 TCTCATGTCCAATCCCATGGGTTTAGGGATGGGCATGGGGATGCCCGGTCTCGGTCTCCT 1006 Query 968 CGACCTTAATTCTATGAACCGAGCTGCTGCTGCTGCAACCGCTCCTAATATCCATGCCAA 1027 |||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1007 CGACCTTAATTCTATGAACCGAGCTGCTGC------AAGCGCTCCTAATATCCATGCCAA 1060 Query 1028 CGTGATGCCAAACCCATTTGCGCCCATGACTTGTCCATCGTGGGATGCTTCTTCCAACGA 1087 | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || Sbjct 1061 CATGATGCCAAACCCATTTTTGCCCATGAATTGTCCATCGTGGGATGCTTCTTCCAATGA 1120 Query 1088 CGCTCGATTTCAGTCTCCTCTCATTCCCGATCCTATGTCTGCCTTTCTTGCATGCTCGAC 1147 | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1121 CTCTCGATTTCAGTCTCCTCTCATCCCCGATCCTATGTCTGCCTTTCTTGCATGCTCTAC 1180 Query 1148 TCAGCCAACGACGATGGAAGCATATAGCAGGATGGCTGCATTATATCAGCAAATGCAACA 1207 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 1181 TCAGCCAACGACGATGGAAGCGTATAGCAGGATGGCTACATTATATCAGCAAATGCAACA 1240 Query 1208 ACAACTTCCTCCT--T-CGAATCCAAAATGATTATT--TGAA-CACGTCTATAT 1255 ||||||||||||| | ||||||||||||||||||| | || ||| ||||||| Sbjct 1241 ACAACTTCCTCCTCCTTCGAATCCAAAATGATTATTACTCAAACACCTCTATAT 1294 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61696469805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5