BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943806 Length=973 Score E Sequences producing significant alignments: (Bits) Value AT4G38460.1 | Symbols: GGR | geranylgeranyl reductase | chr4:17... 1382 0.0 > AT4G38460.1 | Symbols: GGR | geranylgeranyl reductase | chr4:17994781-17996205 FORWARD LENGTH=1280 Length=1280 Score = 1382 bits (748), Expect = 0.0 Identities = 879/938 (94%), Gaps = 25/938 (3%) Strand=Plus/Plus Query 53 TCTTCCTATGAAACTCTCTCCCGCAGCAATTCGATCTTCATCCTC-T-T-CCTCCGGGTC 109 |||||||||||||||||||||||| ||||| |||||||||||||| | | || ||||| Sbjct 134 TCTTCCTATGAAACTCTCTCCCGCTGCAATCCGATCTTCATCCTCATCTGCC-CCGGG-- 190 Query 110 GTCGTCGAATTTCGATCTGAGGACGTATTGGACGACTCTGATCACCGAGATCAACCAGAA 169 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 GTCGTTGAACTTCGATCTGAGGACGTATTGGACGACTCTGATCACCGAGATCAACCAGAA 250 Query 170 GCTGGATGAGGCCATACCGGTCAAGCACCCTGCCGGGATCTACGAGGCTATGAGATACTC 229 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 251 GCTGGATGAGGCCATACCGGTCAAGCACCCTGCGGGGATCTACGAGGCTATGAGATACTC 310 Query 230 TGTCCTCGCACAAGGCGCCAAGCGTGCCCCTCCTGTTATGTGTGTGGCGGCCTGCGAGCT 289 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 311 TGTACTCGCACAAGGCGCCAAGCGTGCCCCTCCTGTGATGTGTGTGGCGGCCTGCGAGCT 370 Query 290 CTTCGGTGGCGATCGCCTCGCCGCTTTCCCCACCGCCTGTGCCCTAGAAATGGTCCACGC 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 371 CTTCGGTGGCGATCGCCTCGCCGCTTTCCCCACCGCCTGTGCCCTAGAAATGGTGCACGC 430 Query 350 GGCTTCGCTGATACACGACGACCTCCCCTGTATGGACGACGATCCTGTGCGCAGAGGAAA 409 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 GGCTTCGTTGATACACGACGACCTCCCCTGTATGGACGACGATCCTGTGCGCAGAGGAAA 490 Query 410 GCCATCTAACCACACTGTCTACGGCTCTGGCATAGCCCTTCTCGCCGGTGACGCCCTCTT 469 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 491 GCCATCTAACCACACTGTCTACGGCTCTGGCATGGCCATTCTCGCCGGTGACGCCCTCTT 550 Query 470 CCCTCTCGGCTTCCACCACATTGTCTCCCACACGCCCCCTGACCTTGTTCCTCGAGCCAC 529 ||| |||| |||||| |||||||||||||||||||| |||||||||||||| |||||||| Sbjct 551 CCCACTCGCCTTCCAGCACATTGTCTCCCACACGCCTCCTGACCTTGTTCCCCGAGCCAC 610 Query 530 CATCCTCAGAGTCATCGCTGAGATTGCCCGCACTGTCGGCTCCACTGGTATGGTTGCAGG 589 |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 611 CATCCTCAGACTCATCACTGAGATTGCCCGCACTGTCGGCTCCACTGGTATGGCTGCAGG 670 Query 590 CCAGTACG-CGGACCTTGAAGGAGGCCCCTTTCCTCTTTCCTTTGTTCAGGAGAAGAAAT 648 |||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 671 CCAGTACGTCG-ACCTTGAAGGAGGTCCCTTTCCTCTTTCCTTTGTTCAGGAGAAGAAAT 729 Query 649 TCGGAGCCATGGGTGAATGCTCCGCCGTGTGCGGAGGCCTCTTGGGCGGTGCCACTGAGG 708 |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 730 TCGGAGCCATGGGTGAATGCTCTGCCGTGTGCGGTGGCCTATTGGGCGGTGCCACTGAGG 789 Query 709 ATGAGCTCGAGTGTCTCAGAAGGTACGGGAGAGCCGTCGGGATGCTCTATCAGGTAGTGG 768 |||||||| || ||||| |||||||||||||||||||||||||||| |||||||| || | Sbjct 790 ATGAGCTCCAGAGTCTCCGAAGGTACGGGAGAGCCGTCGGGATGCTGTATCAGGTGGTCG 849 Query 769 ATGACATCACCGAGGA---GAAGAA---C-A--ATGG---AGCAGGGAAGGCAATG--G- 813 |||||||||||||||| |||||| | | |||| ||||| ||||| |||| | Sbjct 850 ATGACATCACCGAGGACAAGAAGAAGAGCTATGATGGTGGAGCAGAGAAGGGAATGATGG 909 Query 814 AGATGGCGGAAGAGCTCAAGGAGAAGGCCAAGAAGGAGCTTCAAGTGTTTGACAACAAGT 873 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 910 AAATGGCGGAAGAGCTCAAGGAGAAGGCGAAGAAGGAGCTTCAAGTGTTTGACAACAAGT 969 Query 874 ATGGAGGAGGAGACACGCTTGTTCCTCTCTACACCTTCGTTGACTACGCTGCTCATCGAC 933 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 970 ATGGAGGAGGAGACACACTTGTTCCTCTCTACACCTTCGTTGACTACGCTGCTCATCGAC 1029 Query 934 ATTTTCTTCTTCCCCTCTGAATTTTGGGCCTCTCTTTT 971 |||||||||||||||||||| ||||||||| ||||||| Sbjct 1030 ATTTTCTTCTTCCCCTCTGA-TTTTGGGCC-CTCTTTT 1065 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47621971356 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5