BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943862

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38960.3 | Symbols:  | B-box type zinc finger family protein...   784    0.0  


> AT4G38960.3 | Symbols:  | B-box type zinc finger family protein 
| chr4:18161088-18163321 FORWARD LENGTH=1445
Length=1445

 Score =  784 bits (424),  Expect = 0.0
 Identities = 460/478 (96%), Gaps = 0/478 (0%)
 Strand=Plus/Plus

Query  115   AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTTCGTGTTGGTTTAGCCGAACCAAG  174
             |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  710   AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTACGTGTTGGTTTAGCTGAACCAAG  769

Query  175   CAATGCCCCGTGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTATTGTGAGATAGA  234
             ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  770   CAATGCCCCATGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTACTGTGAGATAGA  829

Query  235   CGGTAGCTCTCTTTGTCTGCAATGTGACATGGTCGTACATGTTGGTGGCAAGAGAACACA  294
             |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  830   CGGTAGTTCTCTTTGTCTGCAATGTGACATGGTAGTACATGTTGGTGGCAAGAGAACACA  889

Query  295   TGGTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGTGATAAGCCTAAAGCAAA  354
              ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct  890   CGGTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGGGATAAGCCTAAAGAAAA  949

Query  355   CAATATGAGGGACAATTTGCAGAACCAAAGAGTGTCTACAAACGGAAATGGTGAAGCTAA  414
             ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct  950   CAATACGAGGGACAATTTGCAGAACCAAAGAGTCTCTACAAATGGAAATGGTGAAGCCAA  1009

Query  415   TGGCAAGATTGATGACGAAATGATTGATCTAAATGCTAATCCACAAAGAGTACATGAGCC  474
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1010  TGGGAAGATTGATGACGAAATGATTGATCTAAATGCTAATCCACAAAGAGTACATGAGCC  1069

Query  475   AGCATCAAATAACAACGGGATTGATGTAAATAACGAGAACAATCACGAGGCTCCAGGCAT  534
             | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct  1070  ATCATCAAATAACAACGGGATTGATGTAAATAACGAGAACAATCACGAGCCTGCAGGCCT  1129

Query  535   TGTACCAGTTGGACCCTTTAAACGAGAGTCTGAGAAGTGATAAGGTgagagagagaga  592
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1130  TGTACCAGTTGGACCCTTTAAACGAGAGTCTGAGAAGTGATAAGGTGAGAGAGAGAGA  1187


 Score =  187 bits (101),  Expect = 9e-47
 Identities = 111/116 (96%), Gaps = 0/116 (0%)
 Strand=Plus/Plus

Query  1    CTTTTAAGATTGAAGAAGAAAGATGCGGATTTTGTGCGATGCTTGCGAGAACGCAGCCGC  60
            ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  467  CTTATAAGATTGAAAAAGCAAGATGCGGATTTTGTGCGATGCTTGCGAGAACGCAGCCGC  526

Query  61   AATCGTCTTTTGCGCCGCCGATGAAGCTGCCCTTTGTCGCTCCTGCGATGAAAAAG  116
            |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  527  AATCATCTTTTGCGCCGCCGATGAAGCTGCCCTTTGTCGCCCCTGCGATGAAAAAG  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28633463790


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5