BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943862 Length=595 Score E Sequences producing significant alignments: (Bits) Value AT4G38960.3 | Symbols: | B-box type zinc finger family protein... 784 0.0 > AT4G38960.3 | Symbols: | B-box type zinc finger family protein | chr4:18161088-18163321 FORWARD LENGTH=1445 Length=1445 Score = 784 bits (424), Expect = 0.0 Identities = 460/478 (96%), Gaps = 0/478 (0%) Strand=Plus/Plus Query 115 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTTCGTGTTGGTTTAGCCGAACCAAG 174 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 710 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTACGTGTTGGTTTAGCTGAACCAAG 769 Query 175 CAATGCCCCGTGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTATTGTGAGATAGA 234 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 770 CAATGCCCCATGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTACTGTGAGATAGA 829 Query 235 CGGTAGCTCTCTTTGTCTGCAATGTGACATGGTCGTACATGTTGGTGGCAAGAGAACACA 294 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 830 CGGTAGTTCTCTTTGTCTGCAATGTGACATGGTAGTACATGTTGGTGGCAAGAGAACACA 889 Query 295 TGGTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGTGATAAGCCTAAAGCAAA 354 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 890 CGGTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGGGATAAGCCTAAAGAAAA 949 Query 355 CAATATGAGGGACAATTTGCAGAACCAAAGAGTGTCTACAAACGGAAATGGTGAAGCTAA 414 ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 950 CAATACGAGGGACAATTTGCAGAACCAAAGAGTCTCTACAAATGGAAATGGTGAAGCCAA 1009 Query 415 TGGCAAGATTGATGACGAAATGATTGATCTAAATGCTAATCCACAAAGAGTACATGAGCC 474 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 TGGGAAGATTGATGACGAAATGATTGATCTAAATGCTAATCCACAAAGAGTACATGAGCC 1069 Query 475 AGCATCAAATAACAACGGGATTGATGTAAATAACGAGAACAATCACGAGGCTCCAGGCAT 534 | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct 1070 ATCATCAAATAACAACGGGATTGATGTAAATAACGAGAACAATCACGAGCCTGCAGGCCT 1129 Query 535 TGTACCAGTTGGACCCTTTAAACGAGAGTCTGAGAAGTGATAAGGTgagagagagaga 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 TGTACCAGTTGGACCCTTTAAACGAGAGTCTGAGAAGTGATAAGGTGAGAGAGAGAGA 1187 Score = 187 bits (101), Expect = 9e-47 Identities = 111/116 (96%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1 CTTTTAAGATTGAAGAAGAAAGATGCGGATTTTGTGCGATGCTTGCGAGAACGCAGCCGC 60 ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 467 CTTATAAGATTGAAAAAGCAAGATGCGGATTTTGTGCGATGCTTGCGAGAACGCAGCCGC 526 Query 61 AATCGTCTTTTGCGCCGCCGATGAAGCTGCCCTTTGTCGCTCCTGCGATGAAAAAG 116 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 527 AATCATCTTTTGCGCCGCCGATGAAGCTGCCCTTTGTCGCCCCTGCGATGAAAAAG 582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28633463790 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5