BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943905
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39330.1 | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrog... 1895 0.0
AT2G21730.1 | Symbols: CAD2, ATCAD2 | cinnamyl alcohol dehydrog... 725 0.0
AT2G21890.1 | Symbols: CAD3, ATCAD3 | cinnamyl alcohol dehydrog... 710 0.0
> AT4G39330.1 | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase
9 | chr4:18291218-18293383 FORWARD LENGTH=1744
Length=1744
Score = 1895 bits (1026), Expect = 0.0
Identities = 1108/1148 (97%), Gaps = 3/1148 (0%)
Strand=Plus/Plus
Query 1 CATAAACCCCAATCTCTCACTCAGACAAAGACAGAGACAGAAACAATGGCGAAATCTCCA 60
|||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 7 CATAAA-CCCAATCTCTCACTCAGACTAAGACAGAGTCAGAAACAATGGCGAAATCTCCA 65
Query 61 GAAACAGAGCATCCGAACAAAGTCTTTGGTTGGGGTGCTAGAGACAAATCCGGTCTTCTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 66 GAAACAGAGCATCCGAACAAAGTCTTTGGTTGGGGTGCTAGAGACAAATCCGGTGTTCTC 125
Query 121 TCTCCTTTTCACTTCTCTAGAAGAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TCTCCTTTTCACTTCTCTAGAAGAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTG 185
Query 181 TTTTGTGGAGTTTGCCACACTGATTTACACACCATCAAAAATGACTGGGGATACACGTAT 240
|| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 186 TTCTGTGGAGTTTGCCACACTGATTTACACACCATCAAAAACGACTGGGGATACTCGTAT 245
Query 241 TACCCAGTAGTTCCAGGGCATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TACCCAGTAGTTCCAGGGCATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTG 305
Query 301 ACTAAATTCAAAGAAGGAGATCGTGTCGGTGTAGGAGTGATCACTGGTTCGTGCCAGTCT 360
||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| |||
Sbjct 306 ACTAAATTCAAAGAAGGAGATCGTGTCGGAGTAGGAGTGATCAGTGGCTCGTGCCAATCT 365
Query 361 TGCGAATCTTGTGACCAAGATCTTGAAAATTACTGTCCTCAAATGTCTTTCACATACAAT 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 366 TGCGAATCTTGTGACCAAGATCTTGAAAACTACTGTCCTCAAATGTCTTTCACATACAAT 425
Query 421 GCGATTGGATCCGATGGAACCAAGAATTACGGTGGCTATTCGGAGAACATTGTGGTTGAC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GCGATTGGATCCGATGGAACCAAGAATTACGGTGGCTATTCGGAGAACATTGTGGTTGAT 485
Query 481 CAACGGTTTGTATTGCGGTTTCCCGAGAATTTACCAAGCGATTCGGGTGCGCCGTTGCTG 540
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 486 CAACGGTTTGTTTTGCGGTTTCCGGAGAATTTACCGAGCGATTCGGGTGCGCCGTTGCTG 545
Query 541 TGTGCTGGAATTACTGTGTATAGTCCAATGAAGTATTATGGTATGACTGAGGCAGGGAAG 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TGTGCTGGAATCACTGTGTATAGTCCAATGAAGTATTATGGTATGACTGAGGCAGGGAAG 605
Query 601 CATTT-GGGTGTTGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGC 659
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CATTTAGGG-GTTGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGC 664
Query 660 TTTTGGGTTGAAAGTTACTGTGATTAGTTCTTCTTCTAAGAAAGAAGAGGAAGCCATTAA 719
|||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||
Sbjct 665 TTTTGGTTTGAAAGTTACTGTCATTAGTTCTTCTTCTACGAAAGCAGAGGAAGCCATTAA 724
Query 720 TCATCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAAATGAAGGCTGCAAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TCATCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAAATGAAGGCTGCAAT 784
Query 780 TGGAACAATGGACTACATTATCGACACAATATCAGCAGTACATGCTCTGTATCCGTTGCT 839
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 785 TGGAACAATGGACTACATTATCGATACGATATCAGCAGTACATGCTCTGTATCCGTTGCT 844
Query 840 CGGGTTACTCAAAGTCAACGGAAAGCTCATCGCTTTAGGCTTACCTGAGAAGCCTCTAGA 899
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 845 CGGTTTACTCAAAGTCAACGGAAAGCTCATTGCTTTAGGCTTACCTGAGAAGCCTCTCGA 904
Query 900 GCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTGGGAGGAAGTGACGTGGGAGG 959
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 905 GCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTTGGAGGAAGTGACGTGGGAGG 964
Query 960 GTTGAAGGAGACACAAGAAATGCTTGATTTCTGCGCTAAGCACAACATTACGGCTGATAT 1019
| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 965 GATGAAGGAGACACAAGAGATGCTTGATTTCTGCGCTAAGCACAACATTACAGCTGATAT 1024
Query 1020 TGAGTTGATTAAGATGGATGAGATTAACTCTGCTATGGAGAGACTTGCTAAGTCTGATGT 1079
||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 1025 TGAATTGATTAAGATGGATGAGATTAACACTGCGATGGAGAGGCTTGCTAAGTCTGATGT 1084
Query 1080 TAGGTACAGGTTCGTGATCGACGTGGCTAACTCCTTGAGCCCTCCATGACTGGGCCGAAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 1085 TAGGTACAGGTTCGTGATCGACGTGGCTAACTCCTTGAGCCCTCCATGAATGATCCGGAT 1144
Query 1140 CTAAGAAT 1147
||||||||
Sbjct 1145 CTAAGAAT 1152
> AT2G21730.1 | Symbols: CAD2, ATCAD2 | cinnamyl alcohol dehydrogenase
homolog 2 | chr2:9280044-9281623 FORWARD LENGTH=1141
Length=1141
Score = 725 bits (392), Expect = 0.0
Identities = 847/1060 (80%), Gaps = 58/1060 (5%)
Strand=Plus/Plus
Query 85 TTTGGTTGGG-GTGCTAGA-GACAAATCCGGTC-TTCTCTCTCCTTTTCACTTCTCTAGA 141
|||||||||| | || | | ||| ||| ||| | | |||||||| ||||| |||||||||
Sbjct 32 TTTGGTTGGGCG-GCCA-ACGACGAAT-CGGGCGTCCTCTCTCCATTTCATTTCTCTAGA 88
Query 142 AGAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTGTTTTGTGGAGTTTGCCACACT 201
||||| |||||||| || ||||| ||||||||||||||||| ||||| ||||| ||| ||
Sbjct 89 AGAGAAAATGGTGAGAACGATGTAACAGTGAAGATCTTGTTCTGTGGTGTTTGTCACTCT 148
Query 202 GAT-TTACACACCATCAAAAATGACTGGGGATACACGT-ATTA-CCCAGTAGTTCCAGGG 258
||| || || |||||||| || | ||||||| | | | ||| |||| || |||| |||
Sbjct 149 GATCTT-CATACCATCAAGAACCATTGGGGATTCTC-TCGTTACCCCATTA-TTCCCGGG 205
Query 259 CATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTGACTAAA-TTCAAAGAAGG 317
|||||||||||||| || || ||||||||||| ||||| ||||| ||| || ||||||||
Sbjct 206 CATGAAATCGTTGGAATAGCAACAAAAGTTGGGAAGAATGTGAC-AAAGTTTAAAGAAGG 264
Query 318 AGATCGTGTCGGTGTAGGAGTGATCACT-GGTTCGTGCCAGTCTTGCGAATCTTGTGACC 376
||| || || || ||||| || || | | ||||| ||||| || || ||||| ||| |||
Sbjct 265 AGACCGAGTAGGAGTAGGCGTAAT-AATCGGTTCATGCCAATCATGTGAATCATGTAACC 323
Query 377 AAGATCTT-GAAAATTACTGTCCTCAAATGTC--TTTCACATACAA-T-GCGATTGGATC 431
|||| ||| ||||| || |||||| ||| ||| |||||||||||| | || || ||
Sbjct 324 AAGA-CTTAGAAAACTATTGTCCT-AAA-GTCGTTTTCACATACAACTCTCG-TT-CCTC 378
Query 432 CGATGGAACCA--AG-AATTACGGTGGCTATTCGGA-GAACATTGTGGTTGACCAACGGT 487
|| ||||||| || || | ||||| ||||| || | | ||||| || || || || |
Sbjct 379 TGACGGAACCAGCAGAAACCAAGGTGGTTATTCCGACGTA-ATTGTTGTCGATCACCGCT 437
Query 488 TTGTATTGCGGTTTCCCGA-GAATTTACCAAGCGATTCGGGTGCGCCGTTGCTGTGTGCT 546
|||| | | ||||||| | ||||||||||||||| || |||||| |||| ||||||
Sbjct 438 TTGTCCTAAGCATTCCCGATG-GTTTACCAAGCGATTCAGGCGCGCCGCTGCTCTGTGCT 496
Query 547 GGAATTACTGTGTATAGTCCAATGAAGTATTATGGTATGACT---GAGGCAGGGAAGCAT 603
||||| |||||||| ||||| |||||||||||||| |||||| || ||||||| | |
Sbjct 497 GGAATCACTGTGTACAGTCCCATGAAGTATTATGGCATGACTAAAGAATCAGGGAAACGT 556
Query 604 TTGGGTGTTG-CTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGCTTT 662
|| |||| || |||||||||||| ||||||||| | |||||||||||||||||||| ||
Sbjct 557 TTAGGTG-TGAATGGACTTGGTGGACTTGGTCATATCGCTGTTAAGATTGGTAAAGCCTT 615
Query 663 TGGGTTGAA-AGTTACTGTGATTAGTTCTTCTTCTAAGAAAGA-AGAG-GAAGCCATTAA 719
| |||| || |||||||||||||||| || || ||||| | |||| ||||| ||| |
Sbjct 616 T-GGTTTAAGAGTTACTGTGATTAGTAGGTCATC--AGAAAAAGAGAGAGAAGCAATTGA 672
Query 720 TCATCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAA-ATGAAGGCTGCAA 778
|| ||||||||||||||||||||||| ||||| ||| |||| ||| ||||||| ||
Sbjct 673 TCGGCTTGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCA-AAAGATGAAGGAAGCGG 731
Query 779 TTGGAACAATGGACTACATTATCGACACAATATCAGCAGTACATGCTCT-GTATCCGTTG 837
||||||| ||||| | ||||||||| || ||||||||| ||||||||| || ||||||
Sbjct 732 TTGGAACTATGGATTTCATTATCGATACGGTATCAGCAGAACATGCTCTATTA-CCGTTG 790
Query 838 CTCGGGTTACTCAAAGTCAACGGAAAGCTCATCGCTTTAGGCTTACCTGAGAAGCCTCTA 897
| | || || ||||| || |||||||| | |||||||||||||| |||||||| ||
Sbjct 791 TTTAGTTTGCTTAAAGTGAATGGAAAGCTTGTGGCTTTAGGCTTACCGGAGAAGCCACTC 850
Query 898 GAGCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTGGGAGGAAGTGACG-TGGG 956
|| || ||||| ||| |||| |||||||||||||||||||||||||||||| | | | ||
Sbjct 851 GACCTGCCAATTTTCTCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCA-GATTGG 909
Query 957 AGGGTTGAAGGAGACACAAGAAATGCTTGATTTCTGCGCTAAGCACAACATTACGGCT-G 1015
|||| |||||||||||||||| |||||||| ||||| || ||||| || || || | |
Sbjct 910 AGGGATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAAAAT--CGTTTCG 967
Query 1016 -ATATTGAGTTGATTAAGATG-GATGAGATTAACTCTGCTATGGAGAGACTTG-CTAAGT 1072
|||||||| | || |||||| | ||| || |||||||| ||||| | ||| |||| |
Sbjct 968 GATATTGAGCTCATAAAGATGAG-TGATATCAACTCTGCGATGGACCGT-TTGGCTAAAT 1025
Query 1073 CTGATGTTAGGTACAGGTTCGTGATCGACGTGGCTAACTC 1112
||||||| |||||| ||||||||||||| ||||| |||||
Sbjct 1026 CTGATGTCAGGTACCGGTTCGTGATCGATGTGGCCAACTC 1065
> AT2G21890.1 | Symbols: CAD3, ATCAD3 | cinnamyl alcohol dehydrogenase
homolog 3 | chr2:9331089-9332646 FORWARD LENGTH=1128
Length=1128
Score = 710 bits (384), Expect = 0.0
Identities = 845/1060 (80%), Gaps = 61/1060 (6%)
Strand=Plus/Plus
Query 85 TTTGGTTGGG-GTGCTAGA-GACAAATCCGGTC-TTCTCTCTCCTTTTCACTTCTCTAGA 141
|||||||||| | || | | ||| ||| ||| | | |||||||| ||||| |||||||||
Sbjct 22 TTTGGTTGGGCG-GCCA-ACGACGAAT-CGGGCGTCCTCTCTCCATTTCATTTCTCTAGA 78
Query 142 AGAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTGTTTTGTGGAGTTTGCCACACT 201
||||| |||||||| || ||||| ||||||||||||||||| ||||| ||||| ||| ||
Sbjct 79 AGAGAAAATGGTGAGAACGATGTAACAGTGAAGATCTTGTTCTGTGGTGTTTGTCACTCT 138
Query 202 GAT-TTACACACCATCAAAAATGACTGGGGATACACGT-ATTA-CCCAGTAGTTCCAGGG 258
||| || || |||||||| || | ||||||| | | | ||| |||| || |||| |||
Sbjct 139 GATCTT-CATACCATCAAGAACCATTGGGGATTCTC-TCGTTACCCCATTA-TTCCCGGG 195
Query 259 CATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTGACTAAA-TTCAAAGAAGG 317
|||||||||||||| || || ||||||||||| ||||| ||||| ||| || ||||||||
Sbjct 196 CATGAAATCGTTGGAATAGCAACAAAAGTTGGGAAGAATGTGAC-AAAGTTTAAAGAAGG 254
Query 318 AGATCGTGTCGGTGTAGGAGTGATCACT-GGTTCGTGCCAGTCTTGCGAATCTTGTGACC 376
||| || || || ||||| || || | | ||||| ||||| || || ||||| ||| |||
Sbjct 255 AGACCGAGTAGGAGTAGGCGTAAT-AATCGGTTCATGCCAATCATGTGAATCATGTAACC 313
Query 377 AAGATCTT-GAAAATTACTGTCCTCAAATGTC--TTTCACATACAA-T-GCGATTGGATC 431
|||| ||| ||||| || |||||| ||| ||| |||||||||||| | || || ||
Sbjct 314 AAGA-CTTAGAAAACTATTGTCCT-AAA-GTCGTTTTCACATACAACTCTCG-TT-CCTC 368
Query 432 CGATGGAACCAAG-AATTACGGTGGCTATTCGGA-GAACATTGTGGTTGACCAACGGTTT 489
|| |||||| || || | ||||| ||||| || | | ||||| || || || || |||
Sbjct 369 TGACGGAACC-AGAAACCAAGGTGGTTATTCCGACGTA-ATTGTTGTCGATCACCGCTTT 426
Query 490 GTATTGCGGTTTCCCGA-GAATTTACCAAGCGATTCGGGTGCGCCGTTGCTGTGTGCTGG 548
|| | | ||||||| | ||||||||||||||| || |||||| |||| ||||||||
Sbjct 427 GTCCTAAGCATTCCCGACG-GTTTACCAAGCGATTCAGGCGCGCCGCTGCTCTGTGCTGG 485
Query 549 AATTACTGTGTATAGTCCAATGAAGTATTATGGTATGACT---GAGGCAGGGAAGCATTT 605
||| |||||||| ||||| |||||||||||||| |||||| || ||||||| | |||
Sbjct 486 AATCACTGTGTACAGTCCCATGAAGTATTATGGCATGACTAAAGAATCAGGGAAACGTTT 545
Query 606 GGGTGTTG-CTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGCTTTTG 664
|||| || |||||||||||| ||||||||| | |||||||||||||||||||| |||
Sbjct 546 AGGTG-TGAATGGACTTGGTGGACTTGGTCATATCGCTGTTAAGATTGGTAAAGCCTTT- 603
Query 665 GGTTGAA-AGTTACTGTGATTAGTTCTTCTTCTA-AGAAAGAAGAG-GAAGCCATTAATC 721
|||| || |||||||||||||||| || || | |||||| |||| ||||| ||| |||
Sbjct 604 GGTTTAAGAGTTACTGTGATTAGTAGGTCATC-AGAGAAAG-AGAGAGAAGCAATTGATC 661
Query 722 -ATCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAA-ATGAAGGCTGCAAT 779
| || |||||||||||||||||||| ||||| ||| |||| ||| ||||||| ||| |
Sbjct 662 GA-CTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCA-AAAGATGAAGGAAGCAGT 719
Query 780 TGGAACAATGGACTACATTATCGACACAATATCAGCAGTACATGCTCT-GTATCCGTTGC 838
|||||| ||||| | ||||||||| || ||||||||| ||||||||| || || |||
Sbjct 720 TGGAACTATGGATTTCATTATCGATACGGTATCAGCAGAACATGCTCTATTA-CCTTTGT 778
Query 839 TCGGGTTACTCAAAGTCAACGGAAAGCTCATCGCTTTAGGCTTACCT-GAGAAGCCTCTA 897
| | || || ||||| | |||||||| | ||||||||||| || |||||||| ||
Sbjct 779 TTAGTTTGCTTAAAGTGAGTGGAAAGCTTGTGGCTTTAGGCTT-GCTGGAGAAGCCACTC 837
Query 898 GAGCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTGGGAGGAAGTGACG-TGGG 956
|| || ||||| |||||||| |||||||||||||||||||||||||||||| | | | ||
Sbjct 838 GACCTGCCAATTTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCA-GATTGG 896
Query 957 AGGGTTGAAGGAGACACAAGAAATGCTTGATTTCTGCGCTAAGCACAACATTACGGCT-G 1015
|||| |||||||||||||||| |||||||| ||||| || ||||| || || || | |
Sbjct 897 AGGGATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAAAAT--CGTTTCG 954
Query 1016 -ATATTGAGTTGATTAAGATG-GATGAGATTAACTCTGCTATGGAGAGACTTGCT-AAGT 1072
|||||||| | || |||||| | ||| || |||||||| ||||| | ||| | || |
Sbjct 955 GATATTGAGCTCATAAAGATGAG-TGATATCAACTCTGCGATGGACCGT-TTGGTTAAAT 1012
Query 1073 CTGATGTTAGGTACAGGTTCGTGATCGACGTGGCTAACTC 1112
||||||| |||||| ||||||||||||| ||||| |||||
Sbjct 1013 CTGATGTCAGGTACCGGTTCGTGATCGATGTGGCCAACTC 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56325011490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5