BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943928 Length=1215 Score E Sequences producing significant alignments: (Bits) Value AT4G39520.1 | Symbols: | GTP-binding protein-related | chr4:18... 2067 0.0 > AT4G39520.1 | Symbols: | GTP-binding protein-related | chr4:18370968-18374204 REVERSE LENGTH=1675 Length=1675 Score = 2067 bits (1119), Expect = 0.0 Identities = 1183/1215 (97%), Gaps = 0/1215 (0%) Strand=Plus/Plus Query 1 TCCGGTGTCCTTCTTCCTTTCACTCGCGTTTAACCTCTTTGCCTTGACGTTGTCCCCGTG 60 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| Sbjct 120 TCCGGTGTCCTTCTTCCTTTCACTCGCGTATAACCTCTTTTCCTTGACGTTGTCTCCGTG 179 Query 61 AGCTCTCTCTGCTTTGACTGCAACCATGTCGACTATTATGCAGAAGATCAAAGAAATTGA 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AGCTCTCTGTGCTTTGACTGCAACCATGTCGACTATTATGCAGAAGATCAAAGAAATTGA 239 Query 121 AGATGAGATGGCTAAAACACAGAAGAATAAAGCTACTTCTCATCATCTGGGTTTGTTAAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 AGATGAGATGGCTAAAACACAGAAGAATAAAGCTACTTCTCATCATCTGGGTTTGTTAAA 299 Query 181 GGCCAAACTTGCTAAGCTACGGAGGGACCTTCTTGCACCGCCTACCAAAGGTGGCGGTGG 240 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GGCCAAGCTTGCTAAGCTTCGGAGGGACCTTCTTGCACCGCCTACCAAAGGTGGCGGTGG 359 Query 241 TGGTGCTGGTGAAGGTTTTGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTTGTTGG 300 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 360 TGGTGCTGGAGAAGGTTTTGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTGGTCGG 419 Query 301 GTTTCCTTCGGTTGGAAAATCTACGCTATTGAACAAGCTGACTGGGACATTTTCTGAGGT 360 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 420 ATTTCCTTCGGTTGGAAAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGGT 479 Query 361 TGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATTACATATCGTGGAGC 420 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 480 TGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGC 539 Query 421 TAAAATCCAGTTATTAGATCTTCCTGGTATTATTGAGGGCGCTAAAGACGGAAAAGGTAG 480 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 540 TAAAATCCAGTTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAAAGGTAG 599 Query 481 AGGAAGACAGGTTATAAGTACTGCTAGGACATGCAACTGCATCTTAATAGTTCTTGATGC 540 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 600 AGGAAGACAGGTTATAAGTACGGCTAGGACATGCAACTGCATCTTAATAGTTCTTGATGC 659 Query 541 CATAAAACCAATTACTCACAAGCGTCTCATTGAGAAAGAGCTCGAAGGATTCGGAATAAG 600 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 660 CATAAAACCAATTACTCACAAGCGTCTCATTGAAAAAGAGCTCGAAGGATTCGGAATAAG 719 Query 601 GTTGAACAAGGAGCCACCAAATTTAACATTTAGGAAAAAAGACAAAGGTGGTATCAATCT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GTTGAACAAGGAGCCACCAAATTTAACATTTAGGAAAAAAGACAAAGGTGGTATCAATCT 779 Query 661 AACTTCTACAGTCGCTGTCACACACCTTGACCTCGACACGGTCAAGGCGATTTGCGGTGA 720 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 780 AACTTCTACAGTCGCTGTCACACACCTTGACCTTGACACCGTCAAGGCGATTTGCGGTGA 839 Query 721 GTACAGGATTCACAACGCTGACATCACCCTGCGCTACGATGCAACCGCTGATGACCTCAT 780 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GTACAGGATGCACAATGCTGACATCACCCTGCGCTACGATGCAACCGCTGATGACCTCAT 899 Query 781 TGATGTCATCGAGGGCAGTCGGATATATATGCCCTGTATCTATGCTGTCAACAAGATCGA 840 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 900 TGATGTCATCGAGGGCAGTCGGATTTATATGCCCTGTATCTATGCTGTCAACAAGATCGA 959 Query 841 TTCAATCACACTTGAGGAACTTGAAATTTTGGACAAACTTCCTCATTACTGTCCTGTCAG 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TTCAATCACACTTGAGGAACTTGAAATTTTGGACAAACTTCCTCATTACTGTCCTGTCAG 1019 Query 901 TGCGCATCTGGAGTGGAATCTTGACGGTCTTCTGGACAAGATATGGGAATACTTGGATCT 960 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1020 TGCGCATCTGGAGTGGAATCTTGATGGACTTCTGGACAAGATATGGGAATACTTGGATCT 1079 Query 961 AACTCGAATCTACACAAAACCGAAGGCAATGAATCCGGATTATGATGATCCCGTTATCTT 1020 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1080 AACTCGAATCTACACAAAACCAAAGGCAATGAATCCGGATTATGATGATCCCGTAATCTT 1139 Query 1021 ATCTTCCAAGAAGAGAACAGTAGAGGACTTCTGCATCCGGATTCACAAAGACATGCTTAA 1080 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 ATCATCCAAGAAGAGAACAGTAGAGGACTTCTGCATCCGGATTCACAAAGACATGCTTAA 1199 Query 1081 ACAATTCAAGTACGCTCTGGTTTGGGGTTCGAGTGCCAAACACAAGCCACAAAGAGTTGG 1140 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1200 ACAATTCAAGTACGCTCTGGTTTGGGGTTCAAGTGCCAAACACAAGCCACAAAGAGTTGG 1259 Query 1141 AAAGGAACACGAGCTCGAGGATGAGGATGTTGTTCAGATCGTTAAAAAGATATGATTATT 1200 ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1260 AAAGGAACACGAGCTTGAGGACGAGGATGTTGTTCAGATCGTTAAAAAGATATGATTTTT 1319 Query 1201 CCAGATAATGGAGAG 1215 |||||||||||||| Sbjct 1320 GCAGATAATGGAGAG 1334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59688448005 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5