BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944085
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37650.1 | Symbols: SHR, SGR7 | GRAS family transcription fa... 2697 0.0
> AT4G37650.1 | Symbols: SHR, SGR7 | GRAS family transcription
factor | chr4:17691786-17693760 FORWARD LENGTH=1975
Length=1975
Score = 2697 bits (1460), Expect = 0.0
Identities = 1567/1620 (97%), Gaps = 1/1620 (0%)
Strand=Plus/Plus
Query 10 AAACaaaaaaaaTGGATACTCTCTTTAGACTAGTCAGTCTCCAACAACAACAACAATCCG 69
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AAAAAAAAAAAATGGATACTCTCTTTAGACTAGTCAGTCTCCAACAACAACAACAATCCG 134
Query 70 ATAGTATCATTACAAATCAATCTTCGTTAAGCAGAACCTCCACCACCACTACTGGCTCTC 129
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 135 ATAGTATCATTACAAATCAATCTTCGTTAAGCAGAACTTCCACCACCACTACTGGCTCTC 194
Query 130 CACAAACTGCTTATCACTACAACTTTCCACAAAACGACGTCGTCGAAGAATGCTTCAACT 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 CACAAACTGCTTATCACTACAACTTTCCACAAAACGACGTCGTCGAAGAATGCTTCAACT 254
Query 190 TTTTCATGGATGAAGAAGACCTTTCCTCTTCTTCTTCTCACCACAACCATCACAACCACA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TTTTCATGGATGAAGAAGACCTTTCCTCTTCTTCTTCTCACCACAACCATCACAACCACA 314
Query 250 ACAATCCTAATACTTACTACTCTCCTTTCACTACTCCCACCCAATACCATCCTACCACGT 309
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 315 ACAATCCTAATACTTACTACTCTCCTTTCACTACTCCCACCCAATACCATCCCGCCACAT 374
Query 310 CATCAACCCCTTCCTCCACCGCCGCAGCCGCAGCTTTAGCCTCGCCGTACTCCTCCTCTG 369
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 375 CATCAACCCCTTCCTCCACCGCCGCAGCCGCAGCTTTAGCCTCGCCTTACTCCTCCTCCG 434
Query 370 GCCACCACAATGACCCTTCCGCTTTCTCCATCCCTCAAACTCCTCCGTCCTTCGACTTCT 429
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 435 GCCACCATAATGACCCTTCCGCGTTCTCCATACCTCAAACTCCTCCGTCCTTCGACTTCT 494
Query 430 CAGCCAATGCCAAGTGGGCAGACTCGGTTCTTCTTGAAGCGGCACGTGCCTTCTCCGACA 489
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 495 CAGCCAATGCCAAGTGGGCAGACTCGGTCCTTCTTGAAGCGGCACGTGCCTTCTCCGACA 554
Query 490 AAGACACCGCACGTGCGCAACAAATCCTATGGACGCTTAACGAGCTCTCTTCTCCGTACG 549
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 555 AAGACACTGCACGTGCGCAACAAATCCTATGGACGCTCAACGAGCTCTCTTCTCCGTACG 614
Query 550 GAGACACCGAGCAGAAACTGGCTTCTTACTTCCTCCAAGCTCTCTTCAACCGCATGACCG 609
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GAGACACCGAGCAAAAACTGGCTTCTTACTTCCTCCAAGCTCTCTTCAACCGCATGACCG 674
Query 610 GTTCAGGTGAACGATGCTACAGAACCATGGTAACAGCTGCAGCCACAGAGAAGACATGCT 669
||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 675 GTTCAGGCGAACGATGCTACCGAACCATGGTAACAGCTGCAGCCACAGAGAAGACTTGCT 734
Query 670 CTTTCGAGTCAACGCGCAAAACTGTACTCAAGTTCCAAGAAGTTAGCCCCTGGGCCACGT 729
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 735 CCTTCGAGTCAACGCGAAAAACTGTACTAAAGTTCCAAGAAGTTAGCCCCTGGGCCACGT 794
Query 730 TTGGACACGTGGCGGCAAACGGAGCAATCTTGGAAGCAGTAGACGGAGAGGCAAAGATCC 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TTGGACACGTGGCGGCAAACGGAGCAATCTTGGAAGCAGTAGACGGAGAGGCAAAGATCC 854
Query 790 ATATCGTTGACATAAGCTCAACGTTTTGCACTCAATGGCCGACTCTTCTAGAAGCTTTAG 849
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 855 ACATCGTTGACATAAGCTCCACGTTTTGCACTCAATGGCCGACTCTTCTAGAAGCTTTAG 914
Query 850 CCACGAGATCAGACGACACGCCTCACCTAAGGCTAACCACAGTAGTCGTGGCCAACAAGT 909
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 915 CCACAAGATCAGACGACACGCCTCACCTAAGGCTAACCACAGTTGTCGTGGCCAACAAGT 974
Query 910 TTGTCAACGATCAAACGGCGTCGCATCGGATGATGAAAGAGATCGGAAACCGAATGGAGA 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TTGTCAACGATCAAACGGCGTCGCATCGGATGATGAAAGAGATCGGAAACCGAATGGAGA 1034
Query 970 AATTCGCTAGGCTTATGGGAGTTCCTTTTAAATTCAACATTATTCATCACGTTGGAGATT 1029
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1035 AATTCGCTAGGCTTATGGGAGTTCCTTTCAAATTTAACATTATTCATCACGTTGGAGATT 1094
Query 1030 TGTCTGAGTTTGATCTCAACGAGCTAGATATTAAACCAGACGAAGTCTTGGCCATCAACT 1089
| |||||||||||||||||||| || || ||||||||||||||||||||||||| ||||
Sbjct 1095 TATCTGAGTTTGATCTCAACGAACTCGACGTTAAACCAGACGAAGTCTTGGCCATTAACT 1154
Query 1090 GCGTAGGCGCGATGCATGGGATCGCTCCACGTGGAAGCCCTAGAGACGCTGTGATATCGA 1149
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1155 GCGTAGGCGCGATGCATGGGATCGCTTCACGTGGAAGCCCTAGAGACGCTGTGATATCGA 1214
Query 1150 GTTTCAGAAGGTTAAGACCGAGGATTGTGACGATTGTAGAAGAAGAAGCGGATCTTGTCG 1209
||||| || ||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 1215 GTTTCCGACGGTTAAGACCGAGGATTGTGACGGTCGTAGAAGAAGAAGCTGATCTTGTCG 1274
Query 1210 GAGAAGAAGAAGGTGGCTTTGATGATGAGTTCTTGAGAGGCTTTGGAGAATGTTTACGAT 1269
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1275 GAGAAGAAGAAGGTGGCTTTGATGATGAGTTCTTGAGAGGGTTTGGAGAATGTTTACGAT 1334
Query 1270 GGTTTAGGGTTTGCTTCGAGTCATGGGAAGAGAGTTTTCCGAGGACAAGCAACGAGAGGT 1329
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1335 GGTTTAGGGTTTGCTTCGAGTCATGGGAAGAGAGTTTTCCAAGGACGAGCAACGAGAGGT 1394
Query 1330 TGATGCTAGAGCGTGCTGCGGGACGTGCGATCGTTGATCTTGTGGCTTGTGAGCCGTCGG 1389
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TGATGCTAGAGCGTGCAGCGGGACGTGCGATCGTTGATCTTGTGGCTTGTGAGCCGTCGG 1454
Query 1390 ATTCGACGGAGAGGAGAGAGACGGCGAGGAAGTGGTCGAGGAGGATGAGGAACGGTGGGT 1449
|||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1455 ATTCCACGGAGAGGCGAGAGACAGCGAGGAAGTGGTCGAGGAGGATGAGGAATAGTGGGT 1514
Query 1450 TTGGAGCGGTCGGGTATAGTGATGAGGTGGCGGATGACGTCAGAGCTTTATTGCGGAGAT 1509
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1515 TTGGAGCGGTGGGGTATAGTGATGAGGTGGCGGATGATGTCAGAGCTTTGTTGAGGAGAT 1574
Query 1510 ATAAAGAAGGTGTTTGGTCGATGGTACAGTGTCCTGATGCCGCCGGAATATTCCTTTGTT 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 ATAAAGAAGGTGTTTGGTCGATGGTACAGTGTCCTGATGCCGCCGGAATATTCCTTTGTT 1634
Query 1570 GGAGAGATCAGCCGGTGGTTTGGGCTAGTGCGTGGCGGCCAACGTAAAGGGAtttttttt 1629
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1635 GGAGAGATCAGCCGGTGGTTTGGGCTAGTGCGTGGCGGCCAACGTAAAGGG-TTGTTTTT 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80822877450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5