BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944141
Length=638
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36900.1 | Symbols: RAP2.10, DEAR4 | related to AP2 10 | chr... 942 0.0
> AT4G36900.1 | Symbols: RAP2.10, DEAR4 | related to AP2 10 | chr4:17388814-17389837
FORWARD LENGTH=1024
Length=1024
Score = 942 bits (510), Expect = 0.0
Identities = 599/640 (94%), Gaps = 13/640 (2%)
Strand=Plus/Plus
Query 4 TCTCCGGCGAAAACCA-TATGGAGACGGCGACTGAAGTGGCGACGGTTGTTTCTACTCCG 62
||||||| |||||||| |||||||||||||||||||||||| ||||| || || ||||||
Sbjct 184 TCTCCGGAGAAAACCACTATGGAGACGGCGACTGAAGTGGCCACGGTGGTGTCAACTCCG 243
Query 63 GCGGTTACGGTTGCGGCGGCGGCGACGAGGAAGAGGGAGAAGCCGTATAAAGGGATAAGG 122
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 244 GCGGTTACGGTTGCGGCGGTGGCGACGAGGAAGAGAGATAAGCCGTATAAAGGGATAAGG 303
Query 123 ATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATAAGAGAGCCTAATAAACGGTCAAGGATC 182
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 304 ATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATAAGAGAGCCTAATAAAAGGTCAAGGATC 363
Query 183 TGGCTTGGCTCTTACTCTACTCCTGAAGCGGCGGCGCGAGCTTATGACACGGCCGTGTTT 242
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 364 TGGCTTGGCTCTTACTCTACTCCTGAAGCGGCGGCGCGTGCTTACGACACGGCGGTGTTT 423
Query 243 TATCTCCGAGGTCCTTCCGCTCGGCTTAACTTCCCGGAGCTTCTAGCCGGAGTTACCGTT 302
||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||
Sbjct 424 TATCTCCGAGGTCCTTCTGCTCGGCTTAACTTCCCGGAGCTTTTAGCCGGAGTGACGGT- 482
Query 303 G-CGGGAGGTGGCGGAGGAGGAG-GAAACGGTGGTGGAGATATGTCGGCGGCGTATATAA 360
| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 483 GACGGGAGGAGGCGGAGGAGGAGTGAA-CGGTGGTGGAGATATGTCGGCGGCGTATATAA 541
Query 361 GGAGAAAAGCGGCGGAGGTTGGAGCTCAAGTGGATGCGTTAGAAGCGGCGGGGGCGGGAG 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 GGAGAAAAGCGGCGGAGGTTGGAGCACAAGTGGATGCGTTAGAAGCGGCGGGGGCGGGAG 601
Query 421 GGAATCGtcatcatcatcatcatcatcatcatcaACAACGTGGTAATCATGATTATGGAG 480
||||||||||||||||||||||||| | ||||||| |||||||||||||||| | ||
Sbjct 602 GGAATCGTCATCATCATCATCATCA--A-CATCAAC---GTGGTAATCATGATTACGTAG 655
Query 481 ACAATCTTAGTGATTATCGTATTAATGATGATCATATGGAGTGTAGTAGTAAAGAAGAAT 540
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 656 ATAATCATAGTGATTATCGTATTAATGATGATCTTATGGAGTGTAGTAGTAAAGAAGGGT 715
Query 541 TTAAGAGGTGTAATGGATCGTTGGAACGGGTTGATTTGAACAAATTACCCGATCCGGAAA 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 TTAAGAGGTGTAATGGATCGTTGGAACGGGTTGATTTAAACAAATTACCCGATCCGGAAA 775
Query 601 CTTCAGATGATGATTAGGAAAT-AAAAA-TAGAAACAAAT 638
|||||||||| |||||||||| ||||| |||||||||||
Sbjct 776 CTTCAGATGACGATTAGGAAAGCAAAAAATAGAAACAAAT 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30793532111
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5