BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944155 Length=679 Score E Sequences producing significant alignments: (Bits) Value AT4G37020.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1013 0.0 > AT4G37020.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1). | chr4:17445710-17447369 FORWARD LENGTH=1036 Length=1036 Score = 1013 bits (548), Expect = 0.0 Identities = 612/643 (95%), Gaps = 3/643 (0%) Strand=Plus/Plus Query 1 CAA-TTTGAGAAACTCGGACTATGGACTCCATGGAAGCTCCATCTCCT-CCTTTTCAATC 58 ||| ||||||||| |||| ||||||||||||||||||||||||| || || |||||||| Sbjct 48 CAATTTTGAGAAAGACGGATTATGGACTCCATGGAAGCTCCATCT-CTACCATTTCAATC 106 Query 59 TCCCTCTCGTTCCAGTCAACAATTGCATTTCTACCTCGCCGTGGATCGTCCCCAATTCAA 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 TCCCTCTCGTTCCAGTCAACAATTGCATTTCTACCTCGCCGTGGATCGTCCCCAATTCAA 166 Query 119 AATGGAGACTGTAGTGGAATTATTGGGCGTTCTAGGTCGTCGTCCATGGCTTCCGATTGT 178 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 167 AATGGAGACTGTAGTGGAATTATTAGGCGTTCTAGGTCGTCGTCCATGGCTTCCGATTGT 226 Query 179 AGTCTGTTGCAGCTCTCGTGATGAACTCGACGCCGTCTGTTCTTCCTTATCCACTCTTCC 238 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 227 AGTCTGTTGCAGCTCTCGTGACGAACTTGACGCCGTCTGTTCTTCCTTATCCACTCTTCC 286 Query 239 TTACATTTCATTAGCCGCTTTGTACAGCGATCTAGCAGATAGAGAACGAACTATGGTTAT 298 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 287 TTACATTTCCTTAGCCGCTTTGTACAGCGATCTAGCAGATAGAGAACGAGCTATGGTTAT 346 Query 299 AGAGAAATTCAAGCAAGCAACAATCAACTGGAACCAGCAACTTAACTCTGTGGTAGAGGA 358 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 347 AGAGAAATTCAGGCAAGCAACAATCAACTGGAACCAGCAACTTAACTCTGTGGTAGAAGA 406 Query 359 AGTTTTGGAAGAGAGTGAAACCAGAAAAGAAGAAAATAAATCTCATTTGGTAGTTGTGAC 418 || ||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||| Sbjct 407 AGGTTTGGAAGAGAGTGAAAACGGAAAAGAAGAAAAGACATCTCATTTGGTAGTTGTGAC 466 Query 419 CGATGTTTGTCTTCCGTTACTCTCATCCGGAGAATCTTCTCTCTCCGCCCGCGTTCTCAT 478 ||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct 467 CGATGTTTGCCTTCCGTTACTCTCATCAGGAGAATCTTCTCTATCCGCACGCGTTCTCAT 526 Query 479 CAACTATGAGCTTCCTACAAAGAAGGAAACATATACAAGGCGTATAACAACTTGCTTAGC 538 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 527 AAACTACGAGCTTCCTACAAAGAAGGAAACATATACAAGGCGTATAACAACTTGCTTAGC 586 Query 539 TTCAGGTGGAATTGTCATAAACATGGTTGTTGGAGGTGAAGTCGCGACTCTCAAAAGCCT 598 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 587 TTCAGGTGGAATAGTCATAAACATGGTTGTTGGAGGTGAAGTAACGACTCTCAAAAGCCT 646 Query 599 CGAAGAAAGCAGCGGCATAATCATCGCAGAGATGCCAATCAAT 641 |||||||||||| |||||| ||||||| ||||||||||||||| Sbjct 647 CGAAGAAAGCAGTGGCATACTCATCGCTGAGATGCCAATCAAT 689 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32853132138 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5