BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944194 Length=196 Score E Sequences producing significant alignments: (Bits) Value AT4G36800.1 | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:... 132 1e-30 > AT4G36800.1 | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:17340950-17342759 REVERSE LENGTH=1060 Length=1060 Score = 132 bits (71), Expect = 1e-30 Identities = 111/128 (87%), Gaps = 12/128 (9%) Strand=Plus/Minus Query 61 CGAAAATCGAAACAAATTACGAGCGAATTAAAAAGGTCGCC----G----A--T-TCTCT 109 |||||||| |||| ||||||||||||||||||||||||||| | | | ||||| Sbjct 150 CGAAAATCAAAACGAATTACGAGCGAATTAAAAAGGTCGCCGATTGATTAATCTCTCTCT 91 Query 110 CTCGCCCACCGGATTGTCGTCCTCTGAAGCTAAACGACGAAGAAGCAGAAGAGAAATG-T 168 |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| | Sbjct 90 CTCGCCTACCGGATTGTCGTCCTCTGAAGCTAAACGACGAAGAAACAGCAGAGAAATGGT 31 Query 169 TGCAATAA 176 |||||||| Sbjct 30 TGCAATAA 23 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8702133723 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5