BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944194

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G36800.1 | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:...   132    1e-30


> AT4G36800.1 | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:17340950-17342759 
REVERSE LENGTH=1060
Length=1060

 Score =  132 bits (71),  Expect = 1e-30
 Identities = 111/128 (87%), Gaps = 12/128 (9%)
 Strand=Plus/Minus

Query  61   CGAAAATCGAAACAAATTACGAGCGAATTAAAAAGGTCGCC----G----A--T-TCTCT  109
            |||||||| |||| |||||||||||||||||||||||||||    |    |  | |||||
Sbjct  150  CGAAAATCAAAACGAATTACGAGCGAATTAAAAAGGTCGCCGATTGATTAATCTCTCTCT  91

Query  110  CTCGCCCACCGGATTGTCGTCCTCTGAAGCTAAACGACGAAGAAGCAGAAGAGAAATG-T  168
            |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct  90   CTCGCCTACCGGATTGTCGTCCTCTGAAGCTAAACGACGAAGAAACAGCAGAGAAATGGT  31

Query  169  TGCAATAA  176
            ||||||||
Sbjct  30   TGCAATAA  23



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8702133723


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5