BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944213 Length=236 Score E Sequences producing significant alignments: (Bits) Value AT4G36648.1 | Symbols: | other RNA | chr4:17280528-17282730 RE... 296 6e-80 > AT4G36648.1 | Symbols: | other RNA | chr4:17280528-17282730 REVERSE LENGTH=2105 Length=2105 Score = 296 bits (160), Expect = 6e-80 Identities = 214/238 (90%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 1 ATTAAGGATTTTTGGTGACCTGCCATGCAAGCGCACCTGTCATGGCAAAGGTCGGATGAC 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 502 ATTAAGGA-TTTTGGTGACCTGCCATGCAAGCGCACCTGTCATGGCAAAGGTCGGATGAC 444 Query 61 AAAGATGTTTATTCAGAACTATATCGTCCCTTTAAACATCTCATACACCCATCAATCAAC 120 ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 443 AAAGATGTTTACGCAGAACTATATCGTCCCTATAAACATCTCATACATCCATCAATCAAC 384 Query 121 TTAACTCACATCAATTTCACATATCAGcttcttctctcttcttcaatctctcctctctct 180 ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 383 TTAACTCACATCAATATCACATATCAGCTTCTTCTCTCTTCTTCACCCTCTCATCTCTCT 324 Query 181 ctAGCTCCATCA-ATAATTGACG-A---A--AT-CGTCACCTAATCACAAGCTCAGTA 230 |||||||| | | |||||||| | | || | |||||| |||| |||||||||| Sbjct 323 --AGCTCCAT-AGAGAATTGACGGATTCATCATTCATCACCTCATCAAAAGCTCAGTA 269 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10656762788 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5