BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944252
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36220.1 | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxyla... 2639 0.0
> AT4G36220.1 | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase
1 | chr4:17137344-17139635 REVERSE LENGTH=1819
Length=1819
Score = 2639 bits (1429), Expect = 0.0
Identities = 1545/1601 (97%), Gaps = 7/1601 (0%)
Strand=Plus/Plus
Query 8 AAAAAACTC-CAATATGGAGTCTTCTATATCACAAACACTAAGCAAAGTATCAGATCCCA 66
||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3 AAAAAACACTCAATATGGAGTCTTCTATATCACAAACACTAAGCAAACTATCAGATCCCA 62
Query 67 CAACGGCTCTTCTCATCGTCGTCTCTCTTTTCATCTTCATCGGCTTCATCACACGGCGGC 126
| ||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 63 CGACGTCTCTTGTCATCGTTGTCTCTCTTTTCATCTTCATCAGCTTCATCACACGGCGGC 122
Query 127 GAAGGCCTCCGTATCCTCCCGGTCCACGAGGCTGGCCCATCATAGGCAACATGTTAATGA 186
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 123 GAAGGCCTCCATATCCTCCCGGTCCACGAGGTTGGCCCATCATAGGCAACATGTTAATGA 182
Query 187 TGGACCAACTCACCCACCGTGGTTTAGCCAATTTAGCTAAGAAA-TATGGCGGCTTGTGC 245
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 183 TGGACCAACTCACCCACCGTGGTTTAGCCAATTTAGCTAA-AAAGTATGGCGGATTGTGC 241
Query 246 CATCTCCGCATGGGATTCCTCCATATGTACGCTGTCTCATCACCCGACGTGGCTCGACAA 305
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 242 CATCTCCGCATGGGATTCCTCCATATGTACGCTGTCTCATCACCCGAGGTGGCTCGACAA 301
Query 306 GTCCTTCAAGTCCAAGACAGCGTCTTCTCGAACCGACCTGCAACTATAGCTATAAGCTAT 365
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 302 GTCCTTCAAGTCCAAGACAGCGTCTTCTCGAACCGGCCTGCAACTATAGCTATAAGCTAT 361
Query 366 TTGACTTACGACCGAGCAGACATGGCTTTCGCTCACTACGGACCGTTTTGGAGACAGATG 425
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CTGACTTACGACCGAGCGGACATGGCTTTCGCTCACTACGGACCGTTTTGGAGACAGATG 421
Query 426 AGAAAAGTGTGTGTCATGAAGGTGTTTAGCCGTAAACGTGCTGAGTCATGGGCTTCAGTT 485
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 422 AGAAAAGTGTGTGTCATGAAGGTGTTTAGCCGTAAAAGAGCTGAGTCATGGGCTTCAGTT 481
Query 486 CGAGATGAAGTGGACAAAATGGTCCGGTCGGTCTCTTGTAACGTTGGTAAGCCTATAAAC 545
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CGTGATGAAGTGGACAAAATGGTCCGGTCGGTCTCTTGTAACGTTGGTAAGCCTATAAAC 541
Query 546 GTCGGGGAGCAAATTTTCGCGCTGACCCGCAACATAACTTACCGGGCAGCGTTTGGGTCA 605
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTCGGGGAGCAAATTTTTGCACTGACCCGCAACATAACTTACCGGGCAGCGTTTGGGTCA 601
Query 606 GCCTGCGAGAAGGGACAAGACGAATTCATAAGAATCTTACAAGAGTTCTCTAAGCTTTTT 665
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 602 GCCTGCGAGAAGGGACAAGACGAGTTCATAAGAATCTTACAAGAGTTCTCTAAGCTTTTT 661
Query 666 GGAGCCTTCAACGTAGCGGATTTCATACCATATTTCGGGTGGATCGATCCACAGGGGATT 725
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 662 GGAGCCTTCAACGTAGCGGATTTCATACCATATTTCGGGTGGATCGATCCGCAAGGGATA 721
Query 726 AACAAGCGGCTCGTGAAGGCCCGTAATGATCTAGACGGATTTATTGACGATATCATCGAT 785
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 722 AACAAGCGGCTCGTGAAGGCCCGTAATGATCTAGACGGATTTATTGACGATATTATCGAT 781
Query 786 GAACATATGAAGAAGAAAGAGAATCAAAACGCTGTAGATGATGGGGATGTTGTTGATACC 845
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 782 GAACATATGAAGAAGAAGGAGAATCAAAACGCTGTGGATGATGGGGATGTTGTCGATACC 841
Query 846 GATATGGTTGATGACCTTCTTGGTTTTTACAGTGAAGAGGCCAAATTAGTGAGCGAGGCA 905
|||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||| ||
Sbjct 842 GATATGGTTGATGATCTTCTTGCTTTTTACAGTGAAGAGGCCAAATTAGTCAGTGAGACA 901
Query 906 GCGGATCTTCAAAATTCCATCAAACTTACCCGTGACAATATCAAAGCAATTATCATGGAC 965
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 902 GCGGATCTTCAAAATTCCATCAAACTTACCCGTGACAATATCAAAGCAATCATCATGGAC 961
Query 966 GTTATGTTTGGAGGAACGGAAACGGTAGCGTCGGCGATAGAGTGGGCCTTAACGGAGTTA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GTTATGTTTGGAGGAACGGAAACGGTAGCGTCGGCGATAGAGTGGGCCTTAACGGAGTTA 1021
Query 1026 TTACGGAGCCCCGAGGATCTAAAACGGGTCCAACAAGAACTCGCTGAAGTAGTCGGACTT 1085
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1022 TTACGGAGCCCCGAGGATCTAAAACGGGTCCAACAAGAACTCGCCGAAGTCGTTGGACTT 1081
Query 1086 GACCGAAGAGTTGAAGAATCCGATATAGAGAAGTTGACTTATCTCAAATGCACACTCAAA 1145
||| || |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1082 GACAGACGAGTTGAAGAATCCGACATCGAGAAGTTGACTTATCTCAAATGCACACTCAAA 1141
Query 1146 GAAACCCTAAGGATGCACCCACCGATCCCACTCCTCCTACACGAAACCGCAGAAGACACT 1205
||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||
Sbjct 1142 GAAACCCTAAGGATGCACCCACCGATCCCTCTCCTCCTCCACGAAACCGCGGAGGACACT 1201
Query 1206 AGTATCGACGGTTTCTTCATTCCCAAGAAATCTCGTGTGATGATCAACGCGTTTGCCATA 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGTATCGACGGTTTCTTCATTCCCAAGAAATCTCGTGTGATGATCAACGCGTTTGCCATA 1261
Query 1266 GGACGCGACCCAACCTCTTGGGCTGACCCGGACACGTTTAGACCATCGAGGTTTTTGGAA 1325
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GGACGCGACCCAACCTCTTGGACTGACCCGGACACGTTTAGACCATCGAGGTTTTTGGAA 1321
Query 1326 CCGGGCGTACCGGATTTCAAAGGGAGTAATTTCGAGTTTATACCGTTCGGGTCGGGTCGT 1385
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1322 CCGGGCGTACCGGATTTCAAAGGGAGCAATTTCGAGTTTATACCGTTCGGGTCGGGTCGT 1381
Query 1386 AGATCGTGCCCGGGTATGCAACTAGGGTTATACGCGCTTGACTTAGCCGTGGCTCATATA 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 AGATCGTGCCCGGGTATGCAACTAGGGTTATACGCGCTTGACTTAGCCGTGGCTCATATA 1441
Query 1446 TTACATTGCTTCACGTGGAAATTACCTGATGGGATGAAACCAAGTGAGCTCGACATGAAT 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TTACATTGCTTCACGTGGAAATTACCTGATGGGATGAAACCAAGTGAGCTCGACATGAAT 1501
Query 1506 GATGTGTTTGGTCTCACGGCTCCTAAAGCCACGCGTCTTTTCGCCGTGCCGACCACGCGC 1565
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1502 GATGTGTTTGGTCTCACGGCTCCTAAAGCCACGCGGCTTTTCGCCGTGCCAACCACGCGC 1561
Query 1566 CTCATCTGTGCTCTTTAAAGTT---GGTTCGAATCACGTGG 1603
|||||||||||||||||| ||| ||||||| ||||||||
Sbjct 1562 CTCATCTGTGCTCTTTAA-GTTTATGGTTCGAGTCACGTGG 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79166259465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5