BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944390 Length=1143 Score E Sequences producing significant alignments: (Bits) Value AT4G35080.3 | Symbols: | high-affinity nickel-transport family... 1347 0.0 > AT4G35080.3 | Symbols: | high-affinity nickel-transport family protein | chr4:16698334-16700321 FORWARD LENGTH=1529 Length=1529 Score = 1347 bits (729), Expect = 0.0 Identities = 785/813 (97%), Gaps = 0/813 (0%) Strand=Plus/Plus Query 331 ACGTTATCTACTGGAACTGTCATACTAATCTCTGCAGTAGCTGCGCTTTTCCTTAACCCG 390 ||||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||| Sbjct 429 ACGTTATCTACTGGAACCGTTATACTAATCTCTGCAGTAGCTGTGCTTTTGCTTAACCCG 488 Query 391 CTTCTTGCACCACCTGCTTTCGCTAGCTTTCAAACTGCAGCTAAATCCGGTTGGCTAACA 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 CTTCTTGCACCACCTGCTTTCGCTAGCTTTCAAACTGCAGCTAAATCCGGTTGGCTAACA 548 Query 451 AGTGCGTGGACTGGTTTCCTTGCTGGTTGCTTGCACACGCTCTCAGGACCTGATCACCTC 510 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 AGTGCGTGGACCGGTTTCCTTGCTGGTTGCTTGCACACGCTCTCAGGACCTGATCACCTC 608 Query 511 GCTGCTTTGGCTCCGCTTTCAATCGGACGCAGCAAAATGGAAAGTGCTGCTGTTGGAGCT 570 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 609 GCTGCTTTAGCTCCGCTTTCGATCGGACGCAGCAAAATGGAAAGTGCTGCTGTTGGAGCT 668 Query 571 CTCTGGGGATGTGGACACGACGCTGGTCAAGTCATCTTTGGTTTACTGTTTCTGCTACTT 630 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 669 CTCTGGGGATGTGGGCATGATGCTGGTCAAGTCATCTTTGGTTTACTGTTTCTGCTACTT 728 Query 631 AAAGACCGGCTCCACATCGAAGTATTACAAACTTGGGGTACAAGAATTGTGGGATTGACA 690 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 729 AAAGACCGGCTTCACATTGAAGTATTACAAACTTGGGGTACAAGAATTGTGGGATTGACT 788 Query 691 CTTGTTATCATCGGTGCTATGGGAATCAAGGAAGCTTCCGAGATTCCAGAACCTTGTGTT 750 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 789 CTTGTTATTATCGGTGCTATGGGAATCAAGGAAGCTTCTGAGATTCCAGAACCTTGTGTC 848 Query 751 GCCTTAGAAACCGACATCAGCATGGTATCAACAGAGAAAGAAGCCTTACCACTGCCCAAA 810 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 GCTTTAGAAACCGACATCAGCATGGTATCAACAGAGAAAGAAGCCTTACCACTGCCCAAA 908 Query 811 AAGAAGAAGATCGGGTTTGCTACATTTGCAACTGGAGTGGTTCACGGGTTGCAACCGGAT 870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 AAGAAGAAGATCGGGTTTGCTACATTTGCAACTGGAGTGGTTCACGGGTTGCAACCGGAT 968 Query 871 GCTCTGATGATTGTTTTGCCTGCATTAGCTCTGCCATCTCGGTTAGCAGGGTCTGCGTTT 930 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 969 GCTCTGATGATTGTTTTGCCTGCATTAGCTCTCCCATCACGGTTAGCAGGGTCTGCGTTT 1028 Query 931 CTGATAATGTTTCTGGTTGGGACGGTTATCGCCATGGGAAGTTACACAGCGTTTATTGGG 990 |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 1029 TTGATAATGTTTCTGGTTGGGACAGTTATAGCGATGGGAAGTTACACAGCGTTTATTGGG 1088 Query 991 TCTTGTAGTGAGGCGTTGAAAGAGAAGGTTCCAAGGATCACAGAGAAACTAACTTGGGTT 1050 ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1089 TCTTGCAGTGAGGCTTTGAAAGAGAAAGTTCCAAGGATCACAGAGAAACTAACTTGGGTT 1148 Query 1051 TCGTCTCTTGTGGCTATTGGTCTTGGATTGGGAATTGTCATCAGCCCTTTCTTTGGTTTT 1110 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1149 TCGTCACTTGTGGCTATTGGTCTTGGATTGGGAATTGTCATCAGCCCTTTCTTTGGTTTT 1208 Query 1111 AGCCTCTACTGAGAAAGTAAAAGCTTCGTCAGG 1143 ||||||||||||||||||||||||||| ||||| Sbjct 1209 AGCCTCTACTGAGAAAGTAAAAGCTTCTTCAGG 1241 Score = 472 bits (255), Expect = 5e-132 Identities = 307/332 (92%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 1 CTCGCCGAGAGAGAAGGAGACGCCATGGAAAGGCTTCTGCAACCATCTTCTTCCTCGTCA 60 |||||||||||||||||||||||||||||||||||||| |||||||||||||| || || Sbjct 27 CTCGCCGAGAGAGAAGGAGACGCCATGGAAAGGCTTCTTCAACCATCTTCTTCTTCTTCC 86 Query 61 TCAATTTCTCCTTCCAAATTCCCTTCAAGGACTTCTCCTTTCCTTCCTCGTCTCCGCTCA 120 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 87 TCAATTTCTCCTTCCAAATTCCCTTCACGGACTTCTCCTTTCCTTCCCCGTCTCCGCTCA 146 Query 121 TCGAGTCT-AGGCTTTGTCTCGACTCATCGTCCCGAGTCACGCCGAGTCAGCTCAATTTC 179 ||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 147 TCGGGTCTGAG-CTTTGTCTCGACTCACCGGCCCGAGTCACGCCGAGTCAGCTCAATTTC 205 Query 180 CTGCAACAGTTTCCAGAACCCATCAAC-GTATACGTCTATAGGATCTAACATGACTAACA 238 ||||||||||| ||||| || ||| | ||||||| ||||||||||||||| ||||||| Sbjct 206 CTGCAACAGTTCCCAGATTCCGTCA-CTGTATACGCCTATAGGATCTAACACAACTAACA 264 Query 239 ATTCCTTCAATGGGTCTCCCCAATCGGAAGAATCGAAACCGAATCCCGGATTGCTCACAC 298 |||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||| Sbjct 265 ATTCCTTCAATGGGTCTCCCAAATCGGATGAATCGAAACCTAATCCCGGATTTCTCACAC 324 Query 299 GGATCGCGACGACGGCTTCTGAGCAGCGAAAG 330 ||||||||||| |||||||||||||||||||| Sbjct 325 GGATCGCGACGTCGGCTTCTGAGCAGCGAAAG 356 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56074008765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5