BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944508 Length=1033 Score E Sequences producing significant alignments: (Bits) Value AT4G34090.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1402 0.0 > AT4G34090.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1). | chr4:16327931-16330215 REVERSE LENGTH=1398 Length=1398 Score = 1402 bits (759), Expect = 0.0 Identities = 884/941 (94%), Gaps = 21/941 (2%) Strand=Plus/Plus Query 106 GGCATGTATCTTTTATCAAAGATGTAGCTGCCACTGAACCTCCAATGCATCTTCATCACT 165 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 353 GGCATGTATCATTTATCAAAGATGTTGCTGCCACTGAACCTCCAATGCATCTTCATCACT 412 Query 166 TACTCAAAGTACTTCAAACAAGAGGTGAAACTATTATATCTCCTGGAGCTAAGCAGGGAC 225 |||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||| Sbjct 413 TACTCAAAGTGCTTCAAACAAGAGGTGAGACAATCATATCTCCTGGAGCTAAGCAGGGAC 472 Query 226 TGATCCCTCTTGCTATTCCGCTTTCGAAGAATTCTTCAGGCTCTGTTACTGCGCTTTTGA 285 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 473 TGATCCCTCTTGCTATTCCGCTTTCGAAGAATTCGTCAGGCTCTGTTACTGCGCTTTTGA 532 Query 286 GATGGCCTACTGCTCCACCAGGAATGGATATGCCGGTTGTGGAAGTTTGGGGGAGTGGAG 345 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 533 GATGGCCTACTGCTCCACCAGGAATGGATATGCCGGTTGTGGAAGTTTGGAGGAGTGGAG 592 Query 346 TCCGGCTTATTGCTAGAAACGTAGATGAATACATTCACCGGATTCTAGTTGAAGAAGATG 405 || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 593 TCAGGCTTATAGCTAGAAATGTAGATGAATACATTCACCGGATTCTAGTTGAAGAAGATG 652 Query 406 CACAAGAGTTGACAGAACTTTATCGTGCTTCAGAAGAGGCAGGTGAAAAACTTTACAAAA 465 ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||| Sbjct 653 CACAAGAGTTGACAGAACTATATCGTGCTTCGGGAGAGGCAGGTGAAAAACTTTACGAAA 712 Query 466 AGGGTGCTTTTGCTGAATCTCAAATTGACAATCTCGATGTCTATGTCTTGAAAAAGGTTG 525 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 713 AGGGTGCTTTTGCTGAATCTGAAATTGACAATCTCGATGTCTATGTTTTGAAAAAGGTTG 772 Query 526 GACTGTTTCCAGATTTGTTGGAGCGAAAAGTATTAAGACATTTTGATGAAGGAGATCATG 585 ||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| Sbjct 773 GACTGTTTCCAGATTTGTTGGAGCGGAAAGTATTACGGCATTTTGATGAAGGAGATCATG 832 Query 586 TATCAGCTATGGTGACAGGAGAATTTTACACAAAGAAAGACCTCTTTCCAGGATTTGGAC 645 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 TTTCAGCTATGGTGACAGGAGAATTTTACACAAAGAAAGACCTCTTTCCAGGATTTGGAC 892 Query 646 GACCTTTTGTATATTATGCAAATATACTGCAGAAG-------------G-----TAGGGC 687 |||||||||||||||||||||| ||||| |||||| | |||||| Sbjct 893 GACCTTTTGTATATTATGCAAACATACTACAGAAGTTTATTCTTATTCGCAGGGTAGGGC 952 Query 688 GGAAT-TCAGAAGCAAAAGACGCGGCTAGAGTAGCATTGAAATCACCTTGGTGGACATTA 746 ||||| | |||||||||||| |||||||| |||||||||| |||||| |||||||||||| Sbjct 953 GGAATGT-AGAAGCAAAAGATGCGGCTAGGGTAGCATTGAGATCACCGTGGTGGACATTA 1011 Query 747 GGATGTCCTTATGAGGAGGTTGCTAGTATAGCACAATGGGAAGACGAGCAGATCGAATTC 806 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 GGATGTCCGTATGAGGAGGTTGCTAGTATAGCACAATGGGAAGACGAGCAGATCGAATTC 1071 Query 807 ATCAGGGAAAAGGTGAGTGATGAAGGTCGTTTTGAAGATTTAAAGAAAGGCAAAGCTCCA 866 || |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 1072 ATAAGGGAAAAAGTGAGTGATGAAGGTCGTTTTGAAGATTTGCATAAAGGCAAAGCTCCA 1131 Query 867 ATCCAAGTTGCGTTGGATGTTGCGGCTTTTCTCTTGGATTTGGCTTCTATTGAAGGAACT 926 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1132 ATCCAAGTTGCGTTGGATGTTGCGGCTTTTCTCTTGGATTTGGCTTCTATCGAAGGAACT 1191 Query 927 TGGTCCGAATCTTTAAACCATATTGCTAAATGTTATGAGGAAGCTGGATTACACCATATT 986 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1192 TGGTCCGAATCTTTAAACCATATTGCTAAATGTTATGAGGAAGCTGGATTACACCATATC 1251 Query 987 TCTAATTTCGTTTTGTACACAGATTGAATCCAGATTATATG 1027 |||||||||||||||||||||||||||||||| |||| ||| Sbjct 1252 TCTAATTTCGTTTTGTACACAGATTGAATCCATATTA-ATG 1291 Score = 154 bits (83), Expect = 2e-36 Identities = 101/109 (93%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 1 AGATAGAGAGAT---AAGAAGCCATGGGTTCGATTTCGCTGCACATAACTCCTTCTACTA 57 |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 83 AGATAGAGAGATAAGAAGAAGCCATGGGTTCGATTTCGATGCACATAACTCCCTCTACTG 142 Query 58 CTCTCCCTTTACGCCATTTCAGAGCTAGAGTCTCTTGTTTCTCTTCTGG 106 |||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 143 CTCTCCCTATACGCCATTTCAGAGCTAGAGTCTCTTGTTGCTCTTCTGG 191 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50636020176 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5